Browse Element(s) Details


OsAffx.23644.1.S1_x_at

Description tigr:9629.m04162
TID=OsAffx.23644.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=UDP-glucoronosyl and UDP-glucosyl transferase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4327011/11UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os01g432801/11UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g43220NANA1+25017379..25022910hypothetical protein
LOC_Os01g43230Os.37184.1.S1_at11/111+25022608..25024761expressed protein
LOC_Os01g43230OsAffx.23641.1.S1_at11/111+25022608..25024761expressed protein
LOC_Os01g43240OsAffx.23642.1.S1_at10/111+25026048..25028192hypothetical protein
LOC_Os01g43250Os.663.1.S1_at11/111+25030619..25035759seh1, putative, expressed
LOC_Os01g43260OsAffx.23643.1.S1_at11/111+25036563..25037242hypothetical protein
LOC_Os01g43270OsAffx.23644.1.S1_x_at11/111+25039018..25040460UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os01g43270OsAffx.23644.1.S1_at11/111+25039018..25040460UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os01g43274Os.51449.1.S1_at11/111+25041107..25041649expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006805biological_processxenobiotic metabolism
GO:0009636biological_processresponse to toxin
GO:0009808biological_processlignin metabolism
GO:0042178biological_processxenobiotic catabolism
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0035251molecular_functionUDP-glucosyltransferase activity
GO:0047209molecular_functionconiferyl-alcohol glucosyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23644.1.S1_x_at--55--1011Chr01:25039536..25039560 (25 bp)
AGGTTCCTATGGGTGGTGCGCTTCC
LOC_Os01g43270
OsAffx.23644.1.S1_x_at--883--4891Chr01:25039517..25039541 (25 bp)
GCTTCCCCAGCGACAAGGACGTCAG
LOC_Os01g43270
OsAffx.23644.1.S1_x_at--413--2911Chr01:25039503..25039527 (25 bp)
AAGGACGTCAGTGCGAGCTACTTCG
LOC_Os01g43270
OsAffx.23644.1.S1_x_at--741--7291Chr01:25039493..25039517 (25 bp)
GTGCGAGCTACTTCGGGACGAACGA
LOC_Os01g43270
OsAffx.23644.1.S1_x_at--611--8111Chr01:25039478..25039502 (25 bp)
GGACGAACGACCGTGGCGACAACGA
LOC_Os01g43270
OsAffx.23644.1.S1_x_at--350--7551Chr01:25039466..25039490 (25 bp)
GTGGCGACAACGACGACCCGATGAG
LOC_Os01g43270
OsAffx.23644.1.S1_x_at--478--1811Chr01:25039451..25039475 (25 bp)
ACCCGATGAGCTACCTACCTGAGGG
LOC_Os01g43270
OsAffx.23644.1.S1_x_at--931--1031Chr01:25039373..25039397 (25 bp)
AGGTGGAGGTCCTGAACCACCGCGC
LOC_Os01g43270
OsAffx.23644.1.S1_x_at--758--8631Chr01:25039346..25039370 (25 bp)
TGGGAGGGTTCTTGTCGCACTGCGG
LOC_Os01g43270
OsAffx.23644.1.S1_x_at--137--1312Chr01:25067206..25067229 (24 bp)
AGATGAACGCCGTGATGCTGTCGTC
LOC_Os01g43280
OsAffx.23644.1.S1_x_at--729--9091Chr01:25039235..25039259 (25 bp)
TGCTGTCGTCGGAGAGGGTTGGGCT
LOC_Os01g43270
Target Sequence 
AGGTTCCTATGGGTGGTGCGCTTCCCCAGCGACAAGGACGTCAGTGCGAGCTACTTCGGGACGAACGACCGTGGCGACAA
CGACGACCCGATGAGCTACCTACCTGAGGGGTTCGTCGAGAGGACGAAGGGCGCCGGGCTCGCCGTGCCGCTGTGGGCGC
CGCAGGTGGAGGTCCTGAACCACCGCGCCGTGGGAGGGTTCTTGTCGCACTGCGGGTGGAACTCGACGCTGGAGGCCGCG
TCGGCGGGCGTGCCGACGCTGGCGTGGCCGCTGTTCGCGGAGCAGAAGATGAACGCCGTGATGCTGTCGTCGGAGAGGGT
TGGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23644.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis