Browse Element(s) Details


OsAffx.23641.1.S1_at

Description tigr:9629.m04158
TID=OsAffx.23641.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=probable myb-like protein (imported) - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4323011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g43200NANA1+24998733..24999074hypothetical protein
LOC_Os01g43210Os.55650.1.A1_at6/111+25006438..25013558retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g43210OsAffx.21756.5.A1_x_at5/111+25006438..25013558retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g43210Os.52979.1.S1_at5/111+25006438..25013558retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g43210Os.7307.3.S1_x_at2/111+25006438..25013558retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g43210OsAffx.22143.1.S1_at2/111+25006438..25013558retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g43210OsAffx.4856.1.S1_x_at1/111+25006438..25013558retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g43210Os.22646.1.S1_x_at1/111+25006438..25013558retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g43220NANA1+25017379..25022910hypothetical protein
LOC_Os01g43230Os.37184.1.S1_at11/111+25022608..25024761expressed protein
LOC_Os01g43230OsAffx.23641.1.S1_at11/111+25022608..25024761expressed protein
LOC_Os01g43240OsAffx.23642.1.S1_at10/111+25026048..25028192hypothetical protein
LOC_Os01g43250Os.663.1.S1_at11/111+25030619..25035759seh1, putative, expressed
LOC_Os01g43260OsAffx.23643.1.S1_at11/111+25036563..25037242hypothetical protein
LOC_Os01g43270OsAffx.23644.1.S1_x_at11/111+25039018..25040460UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os01g43270OsAffx.23644.1.S1_at11/111+25039018..25040460UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os01g43274Os.51449.1.S1_at11/111+25041107..25041649expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009913biological_processepidermal cell differentiation
GO:0010063biological_processpositive regulation of trichoblast fate
GO:0030154biological_processcell differentiation
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23641.1.S1_at--803--1711Chr01:25023206..25023230 (25 bp)
ACCAGACCAACATCATCATACTTGC
LOC_Os01g43230
OsAffx.23641.1.S1_at--422--9771Chr01:25022977..25023001 (25 bp)
TAATGTCCACGGGTGACCTTGTAAT
LOC_Os01g43230
OsAffx.23641.1.S1_at--13--7711Chr01:25022967..25022991 (25 bp)
GGGTGACCTTGTAATACTTTGCAAT
LOC_Os01g43230
OsAffx.23641.1.S1_at--371--7811Chr01:25022936..25022960 (25 bp)
GGTCTAACTGACATTGCTCCCAAAA
LOC_Os01g43230
OsAffx.23641.1.S1_at--350--5511Chr01:25022905..25022929 (25 bp)
GAACACACGTGAGATATTCCTAAAG
LOC_Os01g43230
OsAffx.23641.1.S1_at--237--3171Chr01:25022841..25022865 (25 bp)
AATTGAAAGCCCTGTTCCCCAATCT
LOC_Os01g43230
OsAffx.23641.1.S1_at--457--3051Chr01:25022821..25022845 (25 bp)
AATCTTGAGCTTCATCCAAACGTAA
LOC_Os01g43230
OsAffx.23641.1.S1_at--350--7631Chr01:25022791..25022815 (25 bp)
GGGACATCAGCGTTGGGTAGAATAC
LOC_Os01g43230
OsAffx.23641.1.S1_at--773--1531Chr01:25022766..25022790 (25 bp)
AGCATGTCTCAAACCTTTATCTGAA
LOC_Os01g43230
OsAffx.23641.1.S1_at--802--3011Chr01:25022731..25022755 (25 bp)
AATGCTCTGAACTTTTCTCATCCCA
LOC_Os01g43230
OsAffx.23641.1.S1_at--193--551Chr01:25022712..25022736 (25 bp)
ATCCCACTGCAAAGATGGCTTGTAC
LOC_Os01g43230
Target Sequence 
ACCAGACCAACATCATCATACTTGCTTAAGGAATGAGGCAGTATAGTACTACCAAGTGAAGTAACTAAAGTAAACAAGCA
ACCATGTTTATTCTGTAAAGAAGATGAAAAATCTCATATCACTTAATCTAAATTTTGCAGCAGTACACTGAAGGGGAAAT
TTGGTGTTTGGAAACATTTCCCAGAAGGATGTAATCAGTTATGAAGTGACAGTTTTGATGCTAAACAAATAATGTCCACG
GGTGACCTTGTAATACTTTGCAATAGTTGTGGTCTAACTGACATTGCTCCCAAAATAAAAAGAACACACGTGAGATATTC
CTAAAGAACATCGAAAAAATAGTCCAAACCTTGCCCAATTTCCCAAATTGAAAGCCCTGTTCCCCAATCTTGAGCTTCAT
CCAAACGTAAAGAAAGGGACATCAGCGTTGGGTAGAATACAGCATGTCTCAAACCTTTATCTGAATAGACGAAAAAATGC
TCTGAACTTTTCTCATCCCACTGCAAAGATGGCTTGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23641.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis