Browse Element(s) Details


OsAffx.24045.1.S1_at

Description tigr:9629.m07413
TID=OsAffx.24045.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Lectin (probable mannose binding), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6102011/11D-mannose binding lectin family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g60980NANA1+35606726..35613447retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g60990NANA1+35616360..35617745retrotransposon protein, putative, unclassified
LOC_Os01g61000NANA1+35618377..35621612transposon protein, putative, unclassified
LOC_Os01g61010Os.20187.1.S1_at11/111+35630301..35632588Nodulin-like family protein, expressed
LOC_Os01g61010Os.20187.2.S1_at10/111+35630301..35632588Nodulin-like family protein, expressed
LOC_Os01g61020OsAffx.24045.1.S1_at11/111+35636453..35639614D-mannose binding lectin family protein
LOC_Os01g61030Os.47944.1.S1_a_at11/111+35641322..35645694VHS domain containing protein, expressed
LOC_Os01g61044Os.36162.1.S1_s_at11/111+35647689..35654013Transmembrane amino acid transporter protein, expressed
LOC_Os01g61044Os.36162.1.S1_at10/111+35647689..35654013Transmembrane amino acid transporter protein, expressed
LOC_Os01g61060Os.10716.1.S1_at11/111+35655627..35658056Protein of unknown function, DUF614 containing protein, expressed
LOC_Os01g61070Os.6864.1.S1_at11/111+35659554..35660353heavy metal-associated domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005529molecular_functionsugar binding
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24045.1.S1_at--503--4511Chr01:35636965..35636989 (25 bp)
GCCGACCGGCACTACATGGCGGTGA
LOC_Os01g61020
OsAffx.24045.1.S1_at--689--8871Chr01:35636943..35636967 (25 bp)
TGATGGAAGGCGTCACCACGGCGAT
LOC_Os01g61020
OsAffx.24045.1.S1_at--236--1951Chr01:35636899..35636923 (25 bp)
ACGGCCAACGTGACGATGCGGCAGT
LOC_Os01g61020
OsAffx.24045.1.S1_at--439--8751Chr01:35636727..35636751 (25 bp)
TGTACCTGGTGAAGGCTCCAAGAAC
LOC_Os01g61020
OsAffx.24045.1.S1_at--722--6011Chr01:35636702..35636726 (25 bp)
GAGAGACTCTGAGCACGAGCACGGA
LOC_Os01g61020
OsAffx.24045.1.S1_at--491--1711Chr01:35636647..35636671 (25 bp)
ACCAGGATCCTGATCGGCTTCGGCA
LOC_Os01g61020
OsAffx.24045.1.S1_at--1095--4891Chr01:35636631..35636655 (25 bp)
GCTTCGGCACGCTCGACGTGATTGG
LOC_Os01g61020
OsAffx.24045.1.S1_at--747--7411Chr01:35636614..35636638 (25 bp)
GTGATTGGCCTGTGCGCACTTACAT
LOC_Os01g61020
OsAffx.24045.1.S1_at--853--9871Chr01:35636594..35636618 (25 bp)
TACATGGCTGTGTGCGTACTACTGC
LOC_Os01g61020
OsAffx.24045.1.S1_at--1151--9891Chr01:35636578..35636602 (25 bp)
TACTACTGCATCTATCTCCGCGACA
LOC_Os01g61020
OsAffx.24045.1.S1_at--868--1991Chr01:35636556..35636580 (25 bp)
ACATCCCGGTCCTCGACGACAAGGA
LOC_Os01g61020
Target Sequence 
GCCGACCGGCACTACATGGCGGTGATGGAAGGCGTCACCACGGCGATCAGGCCCGCCTCGCCGCCGACGGCCAACGTGAC
GATGCGGCAGTGCGCGGACTCCTGCCTGCGCGACTGCTCCTGCGCCGCCGCGCTCTACGTGCTGGCGGCCGTGGCCGACC
ACGGCGGCGCGTGCTCGCGCTACGAGATGACGGCGGGGGCCCGGGAGGTGATCGGCGGGGGCCACCGGCACAACTACCTG
TACCTGGTGAAGGCTCCAAGAACGAGAGACTCTGAGCACGAGCACGGAGACGACGACGGCGCCGTGAGCCGCGTGCTCAC
CAGGATCCTGATCGGCTTCGGCACGCTCGACGTGATTGGCCTGTGCGCACTTACATGGCTGTGTGCGTACTACTGCATCT
ATCTCCGCGACATCCCGGTCCTCGACGACAAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24045.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis