Browse Element(s) Details


OsAffx.24159.1.S1_at

Description tigr:9630.m00759
TID=OsAffx.24159.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0803011/11Possible apospory-associated protein C, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g08010OsAffx.24158.1.S1_at11/112+4196023..4208367Calcium-transporting ATPase 9, plasma membrane-type, putative, expressed
LOC_Os02g08020OsAffx.11935.1.S1_at10/112+4214152..4215191hypothetical protein
LOC_Os02g08030OsAffx.24159.1.S1_at11/112+4220947..4223596Possible apospory-associated protein C, putative
LOC_Os02g08040NANA2+4234866..4235081hypothetical protein
LOC_Os02g08050NANA2+4239050..4240507hypothetical protein
LOC_Os02g08060NANA2+4245116..4245478hypothetical protein
LOC_Os02g08070OsAffx.11936.1.S1_at11/112+4247469..4251022SBP domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006012biological_processgalactose metabolism
GO:0004034molecular_functionaldose 1-epimerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24159.1.S1_at--996--6391Chr02:4222027..4222176 (25 bp)
GATCTGGCCGCATAGTTTTGAGTTT
LOC_Os02g08030
OsAffx.24159.1.S1_at--1015--8891Chr02:4222009..4222033 (25 bp)
TGAGTTTAGGCTGCGAGTTGCTCTT
LOC_Os02g08030
OsAffx.24159.1.S1_at--205--6051Chr02:4221995..4222019 (25 bp)
GAGTTGCTCTTAGCCCTACAGGAGA
LOC_Os02g08030
OsAffx.24159.1.S1_at--295--8051Chr02:4221975..4221999 (25 bp)
GGAGATCTGATGCTCACATCTCGAA
LOC_Os02g08030
OsAffx.24159.1.S1_at--674--2471Chr02:4221900..4221924 (25 bp)
AACACATATTTTTCAGTCTCTGACA
LOC_Os02g08030
OsAffx.24159.1.S1_at--190--7671Chr02:4221588..4221612 (25 bp)
GGGTTTGGAGACCTTGGACTACATT
LOC_Os02g08030
OsAffx.24159.1.S1_at--673--2911Chr02:4221529..4221553 (25 bp)
AAGGAGATGCCGTTGTATTCGAATC
LOC_Os02g08030
OsAffx.24159.1.S1_at--970--2891Chr02:4221408..4221432 (25 bp)
AAGGTATATTTGAGTGCTCCACCCA
LOC_Os02g08030
OsAffx.24159.1.S1_at--754--9211Chr02:4221391..4221415 (25 bp)
TCCACCCAAGATTGTGATCATTGAC
LOC_Os02g08030
OsAffx.24159.1.S1_at--765--5391Chr02:4221046..4221070 (25 bp)
GAAGCCAATTACATTAAGGCCTGGT
LOC_Os02g08030
OsAffx.24159.1.S1_at--777--251Chr02:4220997..4221021 (25 bp)
ATATCTGTTGTTCCATCCAGTTACA
LOC_Os02g08030
Target Sequence 
GATCTGGCCGCATAGTTTTGAGTTTAGGCTGCGAGTTGCTCTTAGCCCTACAGGAGATCTGATGCTCACATCTCGAATAA
AAAATACCAATGCAGATGGGAAGCCATTCAAATTTGGATTTTCATATAACACATATTTTTCAGTCTCTGACATCAGTGAA
GTACGGGTTGAGGGTTTGGAGACCTTGGACTACATTGACAACCTGCAATGTGGAAAACGTTGTACTGAACAAGGAGATGC
CGTTGTATTCGAATCTGAAGCGGAGAAGGTATATTTGAGTGCTCCACCCAAGATTGTGATCATTGACCATGACAAGAAGA
GAACTTTTGAGTTAAGGAAAGAGGGACTTCCTGATGTTGTTGTTTGGAACCCATGGGACAGGAAAGCAAAAACGATACTG
GATTTTGGGGAGGAAGAGTACAAATGCATGCTATGTGTAGGGGCTGCAAATGCTGAGAAGCCAATTACATTAAGGCCTGG
TGAAGAGTGGCAAGGAAGGCAAGAGATATCTGTTGTTCCATCCAGTTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24159.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis