Browse Element(s) Details


OsAffx.24308.1.S1_s_at

Description tigr:9630.m01753
TID=OsAffx.24308.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1854011/11Protein of unknown function, DUF614 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g18510OsAffx.2667.1.S1_at11/112+10776282..10780756NB-ARC domain containing protein
LOC_Os02g18520Os.46715.1.S1_at3/112+10792693..10797079retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g18520Os.46715.1.S1_x_at2/112+10792693..10797079retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g18530OsAffx.12102.1.S1_at10/112+10800142..10802475hypothetical protein
LOC_Os02g18540OsAffx.24308.1.S1_s_at11/112+10803654..10812274Protein of unknown function, DUF614 containing protein, expressed
LOC_Os02g18550Os.2249.1.S1_at11/112+10822641..1082567040S ribosomal protein S3a, putative, expressed
LOC_Os02g18560NANA2+10827394..10831164retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g18570Os.46862.1.S1_at5/112+10831878..10833756retrotransposon protein, putative, unclassified
LOC_Os02g18580OsAffx.30582.1.S1_s_at10/112+10836766..10837275hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24308.1.S1_s_at--172--4131Chr02:10811891..10811915 (25 bp)
CGCAGTCCAGGCTCCGATGAGGCGA
LOC_Os02g18540
OsAffx.24308.1.S1_s_at--948--5111Chr02:10811926..10811950 (25 bp)
GCAAATAAATAGCTCGCTCCGTCCA
LOC_Os02g18540
OsAffx.24308.1.S1_s_at--787--7271Chr02:10811946..10811970 (25 bp)
GTCCACCGAACGAAGCCATAAGATA
LOC_Os02g18540
OsAffx.24308.1.S1_s_at--108--6471Chr02:10811967..10811991 (25 bp)
GATAAGTGGCCCAGTGCGAGCTGTC
LOC_Os02g18540
OsAffx.24308.1.S1_s_at--1026--7291Chr02:10811980..10812004 (25 bp)
GTGCGAGCTGTCTATCTACCAAAAT
LOC_Os02g18540
OsAffx.24308.1.S1_s_at--165--231Chr02:10812077..10812101 (25 bp)
ATATCTATATCCAACAGCTGTGTAA
LOC_Os02g18540
OsAffx.24308.1.S1_s_at--1097--1591Chr02:10812092..10812116 (25 bp)
AGCTGTGTAAAGAAGCCAGGCATCT
LOC_Os02g18540
OsAffx.24308.1.S1_s_at--554--3851Chr02:10812115..10812139 (25 bp)
CTGAATAATATTTGACATCGCCCTA
LOC_Os02g18540
OsAffx.24308.1.S1_s_at--789--8951Chr02:10812127..10812151 (25 bp)
TGACATCGCCCTAGTTTGATAAACT
LOC_Os02g18540
OsAffx.24308.1.S1_s_at--437--1411Chr02:10812161..10812185 (25 bp)
AGAAAAGCCCGTCCACATAAGCAGG
LOC_Os02g18540
OsAffx.24308.1.S1_s_at--366--9791Chr02:10812178..10812202 (25 bp)
TAAGCAGGCATATGTTTCTCAAACT
LOC_Os02g18540
Target Sequence 
CGCAGTCCAGGCTCCGATGAGGCGATGAACCAGGAGCAAATAAATAGCTCGCTCCGTCCACCGAACGAAGCCATAAGATA
AGTGGCCCAGTGCGAGCTGTCTATCTACCAAAATTATAACAAAATTATAATAGAAAAAATGATACCTCGTGATATTTTTA
TAAAGACTGTAAAATTACTTATCTATATATCTATATCCAACAGCTGTGTAAAGAAGCCAGGCATCTGAATAATATTTGAC
ATCGCCCTAGTTTGATAAACTAGGAAGAGAAGAAAAGCCCGTCCACATAAGCAGGCATATGTTTCTCAAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24308.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis