Browse Element(s) Details


OsAffx.24358.1.S1_at

Description tigr:9630.m02014
TID=OsAffx.24358.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2103011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g21009OsAffx.24357.1.S1_at11/112+12432283..12451253Vacuolar cation/proton exchanger 1c, putative, expressed
LOC_Os02g21009OsAffx.12141.1.S1_at11/112+12432283..12451253Vacuolar cation/proton exchanger 1c, putative, expressed
LOC_Os02g21030OsAffx.24358.1.S1_at11/112+12462366..12462976hypothetical protein
LOC_Os02g21040Os.5365.1.S1_at11/112+12464427..12466553Eukaryotic aspartyl protease family protein, expressed
LOC_Os02g21050NANA2+12473377..12473610hypothetical protein
LOC_Os02g21060OsAffx.485.1.S1_at1/112+12480724..12485768retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24358.1.S1_at--172--2031Chr02:12462864..12462888 (25 bp)
ACTACTACCTGTGTTGCCTAGGCGA
LOC_Os02g21030
OsAffx.24358.1.S1_at--370--6231Chr02:12462788..12462812 (25 bp)
GAGGCCAGCTCTAAGCCAGCGAAAT
LOC_Os02g21030
OsAffx.24358.1.S1_at--754--10611Chr02:12462677..12462778 (25 bp)
TTCGGTGATGAGCTCCTCGATTATA
LOC_Os02g21030
OsAffx.24358.1.S1_at--56--2471Chr02:12462608..12462632 (25 bp)
AACAACCTCGATGTTGGTGGCCTCT
LOC_Os02g21030
OsAffx.24358.1.S1_at--382--9971Chr02:12462569..12462593 (25 bp)
TACCGGGTGTTGATCCAGTGGGCTA
LOC_Os02g21030
OsAffx.24358.1.S1_at--702--8651Chr02:12462551..12462575 (25 bp)
TGGGCTAGCGCCTCGAGTAGGAAAA
LOC_Os02g21030
OsAffx.24358.1.S1_at--810--3051Chr02:12462527..12462551 (25 bp)
AATCTAGGGTGGTATGGTCCTGACA
LOC_Os02g21030
OsAffx.24358.1.S1_at--489--7791Chr02:12462512..12462536 (25 bp)
GGTCCTGACAACAAGCTTCTAGGCT
LOC_Os02g21030
OsAffx.24358.1.S1_at--738--9531Chr02:12462495..12462519 (25 bp)
TCTAGGCTATGTAGACGTCGGGCGT
LOC_Os02g21030
OsAffx.24358.1.S1_at--926--331Chr02:12462424..12462448 (25 bp)
ATACAGAGTACCGTTGTCACCTCTG
LOC_Os02g21030
OsAffx.24358.1.S1_at--484--9491Chr02:12462403..12462427 (25 bp)
TCTGCCTCCTTGACATGCGAAGTGG
LOC_Os02g21030
Target Sequence 
ACTACTACCTGTGTTGCCTAGGCGACATCATCGTCCTCTTCCCCCTGGGTGAGCTGAGGACGATGGCTTGGTTGTCGAGG
CCAGCTCTAAGCCAGCGAAATAGGGAGAGCTTCGGTGATGAGCTCCTCGATTATAGTACGGGGAAGCTATCACCGATTGG
TTGGTGGGCATGGAGCGGGAACAACCTCGATGTTGGTGGCCTCTCCTTGATCCGGTGCTACCGGGTGTTGATCCAGTGGG
CTAGCGCCTCGAGTAGGAAAAATCTAGGGTGGTATGGTCCTGACAACAAGCTTCTAGGCTATGTAGACGTCGGGCGTGGC
GGCCACCTCCCCCTCGTGCTGTCGTTGTCGCCTCCGCCTCCCCATACAGAGTACCGTTGTCACCTCTGCCTCCTTGACAT
GCGAAGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24358.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis