Browse Element(s) Details


OsAffx.24391.1.S1_at

Description tigr:9630.m02194
TID=OsAffx.24391.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2277011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g22710OsAffx.12161.1.S1_at11/112+13530080..13532078hypothetical protein
LOC_Os02g22720OsAffx.8356.1.S1_x_at2/112+13533243..13538609retrotransposon protein, putative, unclassified
LOC_Os02g22730NANA2+13539575..13540274retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g22740NANA2+13540933..13542582retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g22750OsAffx.2718.1.S1_at11/112+13544713..13545168hypothetical protein
LOC_Os02g22760OsAffx.20848.1.S1_x_at1/112+13547151..13552610retrotransposon protein, putative, LINE subclass, expressed
LOC_Os02g22760OsAffx.30273.1.S1_at1/112+13547151..13552610retrotransposon protein, putative, LINE subclass, expressed
LOC_Os02g22770OsAffx.24391.1.S1_at11/112+13555768..13556195hypothetical protein
LOC_Os02g22780Os.9114.1.S1_at11/112+13560751..13565934T-complex protein 1, delta subunit, putative, expressed
LOC_Os02g22790OsAffx.22699.1.S1_x_at1/112+13572273..13578057retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24391.1.S1_at--684--8591Chr02:13555822..13555846 (25 bp)
TGGTGCCGTTGTGTCAGCAAGGTTC
LOC_Os02g22770
OsAffx.24391.1.S1_at--676--7071Chr02:13555834..13555858 (25 bp)
GTCAGCAAGGTTCAGTGGCTTTCCA
LOC_Os02g22770
OsAffx.24391.1.S1_at--502--1111Chr02:13555846..13555870 (25 bp)
CAGTGGCTTTCCAGAGAAGGTTTGA
LOC_Os02g22770
OsAffx.24391.1.S1_at--1067--6851Chr02:13555865..13555889 (25 bp)
GTTTGATGGCAATAGATCGTGTCGG
LOC_Os02g22770
OsAffx.24391.1.S1_at--165--8011Chr02:13555893..13555917 (25 bp)
GGATGGATTTGGTCAGAACGTCTTC
LOC_Os02g22770
OsAffx.24391.1.S1_at--984--211Chr02:13555899..13555923 (25 bp)
ATTTGGTCAGAACGTCTTCGCCGAC
LOC_Os02g22770
OsAffx.24391.1.S1_at--715--1891Chr02:13555922..13555946 (25 bp)
ACGGGAGGCGCAGCCGTACCCATGT
LOC_Os02g22770
OsAffx.24391.1.S1_at--178--1671Chr02:13555933..13555957 (25 bp)
AGCCGTACCCATGTTCTTGTGATGC
LOC_Os02g22770
OsAffx.24391.1.S1_at--109--10551Chr02:13555946..13555970 (25 bp)
TTCTTGTGATGCTGTGTGGCACGAG
LOC_Os02g22770
OsAffx.24391.1.S1_at--322--5571Chr02:13556006..13556113 (25 bp)
GAAAGGACATAGCACGCCACTTGTT
LOC_Os02g22770
OsAffx.24391.1.S1_at--1--2091Chr02:13556095..13556119 (25 bp)
ACATAGCACGCCACTTGTTCGACGA
LOC_Os02g22770
Target Sequence 
TGGTGCCGTTGTGTCAGCAAGGTTCAGTGGCTTTCCAGAGAAGGTTTGATGGCAATAGATCGTGTCGGGGTGGATGGATT
TGGTCAGAACGTCTTCGCCGACGGGAGGCGCAGCCGTACCCATGTTCTTGTGATGCTGTGTGGCACGAGGGGTTGGGCTG
GCGGCTGTGGACTGGTCCAGGGTGGAAAGGACATAGCACGCCACTTGTTCGACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24391.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis