Browse Element(s) Details


OsAffx.24437.1.S1_at

Description tigr:9630.m02515
TID=OsAffx.24437.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2667011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g26630NANA2+15628885..15632059transposon protein, putative, Mutator sub-class
LOC_Os02g26640OsAffx.12209.1.S1_at11/112+15632827..15633604hypothetical protein
LOC_Os02g26650Os.14546.1.S1_at11/112+15635410..156415067-dehydrocholesterol reductase, putative, expressed
LOC_Os02g26660Os.49306.1.S1_at11/112+15644370..15649639oligoribonuclease, putative, expressed
LOC_Os02g26670OsAffx.24437.1.S1_at11/112+15653602..15654807expressed protein
LOC_Os02g26680NANA2+15662333..15662665hypothetical protein
LOC_Os02g26690OsAffx.19542.3.S1_x_at4/112+15664361..15669683retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g26700Os.10784.1.S1_at10/112+15670356..15673681ChaC-like protein, expressed
LOC_Os02g26700Os.39083.1.A1_x_at1/112+15670356..15673681ChaC-like protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24437.1.S1_at--278--4471Chr02:15654084..15654108 (25 bp)
GCCTCCGTCGAGTCATGGGCGGCCT
LOC_Os02g26670
OsAffx.24437.1.S1_at--1060--4691Chr02:15654066..15654090 (25 bp)
GCGGCCTGCGGCGTGACAACGAGCG
LOC_Os02g26670
OsAffx.24437.1.S1_at--267--4071Chr02:15653855..15653879 (25 bp)
CGAGCGGGTACGTGTACAACGCGTC
LOC_Os02g26670
OsAffx.24437.1.S1_at--455--7811Chr02:15653849..15653873 (25 bp)
GGTACGTGTACAACGCGTCGGAGCC
LOC_Os02g26670
OsAffx.24437.1.S1_at--698--9851Chr02:15653841..15653865 (25 bp)
TACAACGCGTCGGAGCCGAGCAAGG
LOC_Os02g26670
OsAffx.24437.1.S1_at--960--9931Chr02:15653805..15653829 (25 bp)
TACGAGCTCGTGGACGCTGAGGTTG
LOC_Os02g26670
OsAffx.24437.1.S1_at--512--4711Chr02:15653777..15653801 (25 bp)
GCGGCCATGGCAGTTACAGTGACAG
LOC_Os02g26670
OsAffx.24437.1.S1_at--542--3451Chr02:15653755..15653779 (25 bp)
CAGTGACAGCAAGAACGGTCGCCAT
LOC_Os02g26670
OsAffx.24437.1.S1_at--1147--1431Chr02:15653744..15653768 (25 bp)
AGAACGGTCGCCATGAGAAGACGTG
LOC_Os02g26670
OsAffx.24437.1.S1_at--818--1091Chr02:15653687..15653711 (25 bp)
AGTGGGAGTGGTTGCCGTGTCCGCC
LOC_Os02g26670
OsAffx.24437.1.S1_at--658--1592Chr03:22623486..22623623 (24 bp)
AGCTGCTGCAGCCATGTCGACGTCG
NONE
Target Sequence 
GCCTCCGTCGAGTCATGGGCGGCCTGCGGCGTGACAACGAGCGGCGGCGGAGGCGCCAGCGAGCGCCTCCTCGTGCTGGC
CGGAGGCGGCGGCGGCAAAGTCTCGCTCTGGGGCGTGGACGGCGACACGCTGCTGCTGGACGCCGAGGCGAACAACACAT
CGATGCCGCCGGAGATGTCGGAGAGGCTCGGCGGCGCCGGCAGCATTGCCGCGGCCGCGGCCGGCGCGGCGAGCGGGTAC
GTGTACAACGCGTCGGAGCCGAGCAAGGGGGCGGTGAGGTACGAGCTCGTGGACGCTGAGGTTGGTGGCGGCCATGGCAG
TTACAGTGACAGTGACAGCAAGAACGGTCGCCATGAGAAGACGTGGGGGAAACGTAGCAGTGGCGGTAGTAGGTGGGAGT
GGGAGTGGTTGCCGTGTCCGCCGGCAGCTGCTGCAGCCATGTCGACGTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24437.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis