Browse Element(s) Details


Os.39083.1.A1_x_at

Description gb:CF278424
DB_XREF= gi:33655810
DB_XREF=14ETL--04-F08.b1
CLONE=14ETL--04-F08
TID=Os.39083.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.39083 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_567871.1 (A.thaliana) predicted protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g267001/11ChaC-like protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g26660Os.49306.1.S1_at11/112+15644370..15649639oligoribonuclease, putative, expressed
LOC_Os02g26670OsAffx.24437.1.S1_at11/112+15653602..15654807expressed protein
LOC_Os02g26680NANA2+15662333..15662665hypothetical protein
LOC_Os02g26690OsAffx.19542.3.S1_x_at4/112+15664361..15669683retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g26700Os.10784.1.S1_at10/112+15670356..15673681ChaC-like protein, expressed
LOC_Os02g26700Os.39083.1.A1_x_at1/112+15670356..15673681ChaC-like protein, expressed
LOC_Os02g26710OsAffx.24439.1.S1_at11/112+15684765..15685157cyclo-DOPA 5-O-glucosyltransferase, putative
LOC_Os02g26720Os.53176.1.S1_at11/112+15691973..15693281Inositol 1, 3, 4-trisphosphate 5/6-kinase family protein, expressed
LOC_Os02g26730OsAffx.12210.1.S1_at7/112+15698435..15698638hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39083.1.A1_x_at--698--9371NONE
TCGAGCTAGCTCTCGAGGTCAGGAA
NONE
Os.39083.1.A1_x_at--1100--911Chr02:15670804..15670823 (20 bp)
AGGAAGGTGTTGAGCCGGCCAAAGG
LOC_Os02g26700
Os.39083.1.A1_x_at--879--10411NONE
TTGAGCCGGCCAAAGGAAAAGATCC
NONE
Os.39083.1.A1_x_at--631--8911NONE
TGAGCCGGCCAAAGGAAAAGATCCC
NONE
Os.39083.1.A1_x_at--1126--5831NONE
GAGCCGGCCAAAGGAAAAGATCCCT
NONE
Os.39083.1.A1_x_at--10--4491NONE
GCCGGCCAAAGGAAAAGATCCCTGG
NONE
Os.39083.1.A1_x_at--956--2291NONE
AAAGGAAAAGATCCCTGGCTCCGAT
NONE
Os.39083.1.A1_x_at--248--10251NONE
TTTGTACCCCTGTTTGGGCTTCCTG
NONE
Os.39083.1.A1_x_at--938--10771NONE
TTGTACCCCTGTTTGGGCTTCCTGA
NONE
Os.39083.1.A1_x_at--795--10231NONE
TTTGGGCTTCCTGAGGGCCCTGTTG
NONE
Os.39083.1.A1_x_at--150--1251NONE
AGATTTCCTTTGACCTACTCACTTT
NONE
Target Sequence 
TCGAGCTAGCTCTCGAGGTCAGGAAGGTGTTGAGCCGGCCAAAGGAAAAGATCCCTGGCTCCGATAGCCCCCAAAAATTT
CACGCTTTTGTACCCCTGTTTGGGCTTCCTGAGGGCCCTGTTGTGGACTCAAAATAGCAAGCTCGGCGGTGGAAAAAATG
AGATTTCCTTTGACCTACTCACTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39083.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis