Browse Element(s) Details


Os.53176.1.S1_at

Description gb:AK071209.1
DB_XREF= gi:32981232
TID=Os.53176.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53176 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023087H13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023087H13, full insert sequence.
FL= gb:AK071209.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2672011/11Inositol 1, 3, 4-trisphosphate 5/6-kinase family protein, expressed
LOC_Os10g425501/11inositol phosphate kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g26690OsAffx.19542.3.S1_x_at4/112+15664361..15669683retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g26700Os.10784.1.S1_at10/112+15670356..15673681ChaC-like protein, expressed
LOC_Os02g26700Os.39083.1.A1_x_at1/112+15670356..15673681ChaC-like protein, expressed
LOC_Os02g26710OsAffx.24439.1.S1_at11/112+15684765..15685157cyclo-DOPA 5-O-glucosyltransferase, putative
LOC_Os02g26720Os.53176.1.S1_at11/112+15691973..15693281Inositol 1, 3, 4-trisphosphate 5/6-kinase family protein, expressed
LOC_Os02g26730OsAffx.12210.1.S1_at7/112+15698435..15698638hypothetical protein
LOC_Os02g26740Os.25411.1.A1_at2/112+15700031..15704838transposon protein, putative, Pong sub-class, expressed
LOC_Os02g26750NANA2+15705574..15706932transposon protein, putative, Pong sub-class
LOC_Os02g26760OsAffx.12211.1.S1_at11/112+15708966..15710565hypothetical protein
LOC_Os02g26770Os.11417.1.S1_at4/112+15711180..15712900Trans-cinnamate 4-monooxygenase, putative
LOC_Os02g26780OsAffx.2764.1.S1_at11/112+15717313..15719377transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0046853biological_processinositol and derivative phosphorylation
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003824molecular_functioncatalytic activity
GO:0004428molecular_functioninositol or phosphatidylinositol kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53176.1.S1_at--271--6131Chr02:15692863..15692887 (25 bp)
GAGGGCTGGGCCTGCACCTGTTCAA
LOC_Os02g26720
Os.53176.1.S1_at--429--1772Chr02:15692878..15692902 (25 bp)
ACCTGTTCAACTTCGACATGATCCG
LOC_Os02g26720
Os.53176.1.S1_at--721--5931Chr02:15692916..15692940 (25 bp)
GAGCACGGCGACAGGTACTTCATCA
LOC_Os02g26720
Os.53176.1.S1_at--455--3991Chr02:15692959..15692983 (25 bp)
CGGGCTACGCCAAGATGCCGGGCTA
LOC_Os02g26720
Os.53176.1.S1_at--357--1931Chr02:15692997..15693021 (25 bp)
ACGGATTTCTTCCTTGAGATGCTCC
LOC_Os02g26720
Os.53176.1.S1_at--627--6331Chr02:15693014..15693038 (25 bp)
GATGCTCCGTGGCACAAGACCTGTT
LOC_Os02g26720
Os.53176.1.S1_at--261--2771Chr02:15693029..15693053 (25 bp)
AAGACCTGTTCCTGAGCAGCTGGGC
LOC_Os02g26720
Os.53176.1.S1_at--111--8351Chr02:15693097..15693121 (25 bp)
GGCTGGGTATCGGTCTAAGAGAATT
LOC_Os02g26720
Os.53176.1.S1_at--876--1471Chr02:15693116..15693140 (25 bp)
AGAATTGGAGTCTGGCCGAGCTCAG
LOC_Os02g26720
Os.53176.1.S1_at--521--3711Chr02:15693143..15693167 (25 bp)
CTAGCTAGCACTCCGAGGCTCGGTG
LOC_Os02g26720
Os.53176.1.S1_at--680--5811Chr02:15693193..15693217 (25 bp)
GACCCAGCGTTTGAACATGTGTGCA
LOC_Os02g26720
Target Sequence 
GAGGGCTGGGCCTGCACCTGTTCAACTTCGACATGATCCGGGAGAGGAGCGAGGAGCACGGCGACAGGTACTTCATCATC
GACATCAACTACTTCCCGGGCTACGCCAAGATGCCGGGCTACGAGGCGGCCCTCACGGATTTCTTCCTTGAGATGCTCCG
TGGCACAAGACCTGTTCCTGAGCAGCTGGGCCCGGGCTCGGGCCTGGACATGGAGGCCCGCAAGCTCGAGCCTGGGCTGG
GTATCGGTCTAAGAGAATTGGAGTCTGGCCGAGCTCAGGCCTAGCTAGCACTCCGAGGCTCGGTGTTGGCCCGTCAGCTC
GGCCCGGCCCGACCCAGCGTTTGAACATGTGTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53176.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis