Browse Element(s) Details


OsAffx.24439.1.S1_at

Description tigr:9630.m02522
TID=OsAffx.24439.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2671011/11cyclo-DOPA 5-O-glucosyltransferase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g26680NANA2+15662333..15662665hypothetical protein
LOC_Os02g26690OsAffx.19542.3.S1_x_at4/112+15664361..15669683retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g26700Os.10784.1.S1_at10/112+15670356..15673681ChaC-like protein, expressed
LOC_Os02g26700Os.39083.1.A1_x_at1/112+15670356..15673681ChaC-like protein, expressed
LOC_Os02g26710OsAffx.24439.1.S1_at11/112+15684765..15685157cyclo-DOPA 5-O-glucosyltransferase, putative
LOC_Os02g26720Os.53176.1.S1_at11/112+15691973..15693281Inositol 1, 3, 4-trisphosphate 5/6-kinase family protein, expressed
LOC_Os02g26730OsAffx.12210.1.S1_at7/112+15698435..15698638hypothetical protein
LOC_Os02g26740Os.25411.1.A1_at2/112+15700031..15704838transposon protein, putative, Pong sub-class, expressed
LOC_Os02g26750NANA2+15705574..15706932transposon protein, putative, Pong sub-class
LOC_Os02g26760OsAffx.12211.1.S1_at11/112+15708966..15710565hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009808biological_processlignin metabolism
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
GO:0047209molecular_functionconiferyl-alcohol glucosyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24439.1.S1_at--470--7631Chr02:15684815..15684839 (25 bp)
GGGACTCCGGCGACCATTCGCACTG
LOC_Os02g26710
OsAffx.24439.1.S1_at--131--111Chr02:15684830..15684854 (25 bp)
ATTCGCACTGCACCGATCACGAAGC
LOC_Os02g26710
OsAffx.24439.1.S1_at--971--6432Chr04:25032544..25032567 (24 bp)
GATCACGAAGCACCCAAGCACGAAT
NONE
OsAffx.24439.1.S1_at--667--5372Chr04:25032549..25032568 (20 bp)
GAAGCACCCAAGCACGAATCGACGT
NONE
OsAffx.24439.1.S1_at--402--5251Chr02:15684865..15684889 (25 bp)
GAATCGACGTCCAAGCATGGGCGAT
LOC_Os02g26710
OsAffx.24439.1.S1_at--1021--3231Chr02:15684876..15684900 (25 bp)
CAAGCATGGGCGATTGGGCCAATCC
LOC_Os02g26710
OsAffx.24439.1.S1_at--1044--4471Chr02:15684908..15684932 (25 bp)
GCCGGCTCCGTTAAAATCGCAGGAT
LOC_Os02g26710
OsAffx.24439.1.S1_at--639--9811Chr02:15684919..15684943 (25 bp)
TAAAATCGCAGGATGACGACACCAG
LOC_Os02g26710
OsAffx.24439.1.S1_at--783--1531Chr02:15684942..15684966 (25 bp)
AGCATCATCCAGTGGCTAGACGCAC
LOC_Os02g26710
OsAffx.24439.1.S1_at--398--9231Chr02:15684949..15684973 (25 bp)
TCCAGTGGCTAGACGCACATCCGCG
LOC_Os02g26710
OsAffx.24439.1.S1_at--248--8551Chr02:15685051..15685075 (25 bp)
TGGAGACGAGCGGACGGCCGTTCCT
LOC_Os02g26710
Target Sequence 
GGGACTCCGGCGACCATTCGCACTGCACCGATCACGAAGCACCCAAGCACGAATCGACGTCCAAGCATGGGCGATTGGGC
CAATCCTCGCGGCGCCGGCTCCGTTAAAATCGCAGGATGACGACACCAGCATCATCCAGTGGCTAGACGCACATCCGCGG
CGCTCGGTGCTGTACATCTCATTTGGGTCGCAGAACAGCATCAGCATCCATCAGATGGCGGAGCTGGCGCTGGGGCTGGA
GACGAGCGGACGGCCGTTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24439.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis