Browse Element(s) Details


Os.11417.1.S1_at

Description gb:AK072588.1
DB_XREF= gi:32982611
TID=Os.11417.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11417 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023132G16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023132G16, full insert sequence.
FL= gb:AK072588.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2681011/11Trans-cinnamate 4-monooxygenase, putative, expressed
LOC_Os02g267704/11Trans-cinnamate 4-monooxygenase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g26740Os.25411.1.A1_at2/112+15700031..15704838transposon protein, putative, Pong sub-class, expressed
LOC_Os02g26750NANA2+15705574..15706932transposon protein, putative, Pong sub-class
LOC_Os02g26760OsAffx.12211.1.S1_at11/112+15708966..15710565hypothetical protein
LOC_Os02g26770Os.11417.1.S1_at4/112+15711180..15712900Trans-cinnamate 4-monooxygenase, putative
LOC_Os02g26780OsAffx.2764.1.S1_at11/112+15717313..15719377transposon protein, putative, unclassified
LOC_Os02g26790Os.51784.1.S1_at11/112+15719957..15721664expressed protein
LOC_Os02g26790OsAffx.24440.1.S1_s_at11/112+15719957..15721664expressed protein
LOC_Os02g26790Os.9574.1.S1_at11/112+15719957..15721664expressed protein
LOC_Os02g26800NANA2+15723235..15726667expressed protein
LOC_Os02g26810Os.11417.1.S1_at11/112+15728958..15730985Trans-cinnamate 4-monooxygenase, putative, expressed
LOC_Os02g26820OsAffx.12212.1.S1_at11/112+15741979..15742407hypothetical protein
LOC_Os02g26820Os.40855.5.S1_x_at6/112+15741979..15742407hypothetical protein
LOC_Os02g26830NANA2+15743509..15744081hypothetical protein
LOC_Os02g26840OsAffx.12213.1.S1_at11/112+15753641..15754681MBOAT family protein

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Gene Ontology Classification
GO idTypeName
GO:0009411biological_processresponse to UV
GO:0009416biological_processresponse to light stimulus
GO:0009611biological_processresponse to wounding
GO:0009699biological_processphenylpropanoid biosynthesis
GO:0009809biological_processlignin biosynthesis
GO:0009813biological_processflavonoid biosynthesis
GO:0005783cellular_componentendoplasmic reticulum
GO:0005792cellular_componentmicrosome
GO:0004497molecular_functionmonooxygenase activity
GO:0016710molecular_functiontrans-cinnamate 4-monooxygenase activity
GO:0016711molecular_functionflavonoid 3'-monooxygenase activity
GO:0019825molecular_functionoxygen binding
GO:0046409molecular_functionp-coumarate 3-hydroxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11417.1.S1_at--86--8992Chr02:15730448..15730472 (25 bp)
TGAACGCGTGGTGGCTGGCCAACAA
LOC_Os02g26810
Os.11417.1.S1_at--177--8352Chr02:15730460..15730484 (25 bp)
GGCTGGCCAACAACCCGGCGCTGTG
LOC_Os02g26810
Os.11417.1.S1_at--1082--9272Chr02:15730502..15730526 (25 bp)
TCCGGCCTGAGCGGTTCTTGGAGAA
LOC_Os02g26810
Os.11417.1.S1_at--636--8472Chr02:15730634..15730658 (25 bp)
TGGCGCTCATCGTCGGGAAGCTGGT
LOC_Os02g26810
Os.11417.1.S1_at--1136--452Chr02:15730771..15730795 (25 bp)
ATCTCTGCCTGAACTCATCGAATCC
LOC_Os02g26810
Os.11417.1.S1_at--470--5231Chr02:15730800..15730824 (25 bp)
GAATCAAGTTCGTGCCATCAGTCGA
LOC_Os02g26810
Os.11417.1.S1_at--65--7291Chr02:15730811..15730835 (25 bp)
GTGCCATCAGTCGATAAATCCAATT
LOC_Os02g26810
Os.11417.1.S1_at--945--10171Chr02:15730875..15730899 (25 bp)
TATAAATGACAGCTTACAGCATGTT
LOC_Os02g26810
Os.11417.1.S1_at--104--10511Chr02:15730900..15730924 (25 bp)
TTCAGTTTTGTTTCCTAAAGAGTGT
LOC_Os02g26810
Os.11417.1.S1_at--309--8211Chr02:15730942..15730966 (25 bp)
GGAATTGTCATCCAACTAGTGTGAG
LOC_Os02g26810
Os.11417.1.S1_at--781--2031Chr02:15730956..15730980 (25 bp)
ACTAGTGTGAGAAAGTGCTCTGCTT
LOC_Os02g26810
Target Sequence 
TGAACGCGTGGTGGCTGGCCAACAACCCGGCGCTGTGGGAGAACCCCGAGGAGTTCCGGCCTGAGCGGTTCTTGGAGAAG
GAGAGCGGCGTGGACGCCACCGTCGCCGGGAAGGTGGACTTCAGGTTCCTGNCCTTNGGCGTGGGCCGCCGCAGCTGNCC
CGGGGATCATCCTGGCGCTGCCCATCCTGGCGCTCATCGTCGGGAAGCTGGTGAGGAGCTTCGAGATGGTGCCGCCGCCG
GGCGTGGAGAAGCTGGACGTGAGCGAGAAAGGCGGGCAGTTCAGCCTCCACATCGCCAAGCACTCCGTCGTCGCCTTCCA
CCCCATCTCTGCCTGAACTCATCGAATCCCTTNGAATCAAGTTCGTGCCATCAGTCGATAAATCCAATTAAAATTTTTGT
TTGTTTATAAAATTGCAGAAGAATAGGTTATAAATGACAGCTTACAGCATGTTTTCAGTTTTGTTTCCTAAAGAGTGTAA
TTTGAAAAGTGAAATGGAATTGTCATCCAACTAGTGTGAGAAAGTGCTCTGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11417.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis