Browse Element(s) Details


Os.9574.1.S1_at

Description gb:AK064583.1
DB_XREF= gi:32974601
TID=Os.9574.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9574 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-112-F04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-112-F04, full insert sequence.
FL= gb:AK064583.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2679011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g26730OsAffx.12210.1.S1_at7/112+15698435..15698638hypothetical protein
LOC_Os02g26740Os.25411.1.A1_at2/112+15700031..15704838transposon protein, putative, Pong sub-class, expressed
LOC_Os02g26750NANA2+15705574..15706932transposon protein, putative, Pong sub-class
LOC_Os02g26760OsAffx.12211.1.S1_at11/112+15708966..15710565hypothetical protein
LOC_Os02g26770Os.11417.1.S1_at4/112+15711180..15712900Trans-cinnamate 4-monooxygenase, putative
LOC_Os02g26780OsAffx.2764.1.S1_at11/112+15717313..15719377transposon protein, putative, unclassified
LOC_Os02g26790Os.51784.1.S1_at11/112+15719957..15721664expressed protein
LOC_Os02g26790OsAffx.24440.1.S1_s_at11/112+15719957..15721664expressed protein
LOC_Os02g26790Os.9574.1.S1_at11/112+15719957..15721664expressed protein
LOC_Os02g26800NANA2+15723235..15726667expressed protein
LOC_Os02g26810Os.11417.1.S1_at11/112+15728958..15730985Trans-cinnamate 4-monooxygenase, putative, expressed
LOC_Os02g26820OsAffx.12212.1.S1_at11/112+15741979..15742407hypothetical protein
LOC_Os02g26820Os.40855.5.S1_x_at6/112+15741979..15742407hypothetical protein
LOC_Os02g26830NANA2+15743509..15744081hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9574.1.S1_at--323--31Chr02:15721207..15721231 (25 bp)
ATTGGACCATGCAAGTACACGCAAC
LOC_Os02g26790
Os.9574.1.S1_at--235--2811Chr02:15721195..15721219 (25 bp)
AAGTACACGCAACCCTACCAAGGCG
LOC_Os02g26790
Os.9574.1.S1_at--215--6791Chr02:15721114..15721138 (25 bp)
GTTAGAATTTCAGATGGCTTCACAG
LOC_Os02g26790
Os.9574.1.S1_at--1150--8271Chr02:15721099..15721123 (25 bp)
GGCTTCACAGATCTCGGCAATCGAA
LOC_Os02g26790
Os.9574.1.S1_at--858--2471Chr02:15721036..15721060 (25 bp)
AACAGAAGACCTCAAGGCTTGGCTT
LOC_Os02g26790
Os.9574.1.S1_at--1100--2911Chr02:15721023..15721047 (25 bp)
AAGGCTTGGCTTATGGGTTCCCTAG
LOC_Os02g26790
Os.9574.1.S1_at--398--7891Chr02:15721008..15721032 (25 bp)
GGTTCCCTAGTCGTTATTGCATTTC
LOC_Os02g26790
Os.9574.1.S1_at--390--751Chr02:15720960..15720984 (25 bp)
ATGTATCAGGGATGTTGATGCTTCA
LOC_Os02g26790
Os.9574.1.S1_at--16--691Chr02:15720928..15720952 (25 bp)
ATGACGTGTGTTGATGCGGCTTTAA
LOC_Os02g26790
Os.9574.1.S1_at--604--9131Chr02:15720914..15720938 (25 bp)
TGCGGCTTTAAATTTGTGTCAATCT
LOC_Os02g26790
Os.9574.1.S1_at--459--7451Chr02:15720899..15720923 (25 bp)
GTGTCAATCTATTTCATTGCTAATT
LOC_Os02g26790
Target Sequence 
ATTGGACCATGCAAGTACACGCAACCCTACCAAGGCGCAGTACCAATGGTCAAATTTTGTAGACAGAACAATAGTCGAAG
AAGACAAAATGAAGTTAGAATTTCAGATGGCTTCACAGATCTCGGCAATCGAAGCAAAACATAAGAAGAGAGTTTCCAGG
ATAAAAAAGGAAACAGAAGACCTCAAGGCTTGGCTTATGGGTTCCCTAGTCGTTATTGCATTTCTTTTATTTAAAATTAT
CGAAAATATGTATCAGGGATGTTGATGCTTCAAATATGTATGACGTGTGTTGATGCGGCTTTAAATTTGTGTCAATCTAT
TTCATTGCTAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9574.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis