Browse Element(s) Details


OsAffx.12212.1.S1_at

Description tigr:9630.m02534
TID=OsAffx.12212.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2682011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g26780OsAffx.2764.1.S1_at11/112+15717313..15719377transposon protein, putative, unclassified
LOC_Os02g26790Os.51784.1.S1_at11/112+15719957..15721664expressed protein
LOC_Os02g26790OsAffx.24440.1.S1_s_at11/112+15719957..15721664expressed protein
LOC_Os02g26790Os.9574.1.S1_at11/112+15719957..15721664expressed protein
LOC_Os02g26800NANA2+15723235..15726667expressed protein
LOC_Os02g26810Os.11417.1.S1_at11/112+15728958..15730985Trans-cinnamate 4-monooxygenase, putative, expressed
LOC_Os02g26820OsAffx.12212.1.S1_at11/112+15741979..15742407hypothetical protein
LOC_Os02g26820Os.40855.5.S1_x_at6/112+15741979..15742407hypothetical protein
LOC_Os02g26830NANA2+15743509..15744081hypothetical protein
LOC_Os02g26840OsAffx.12213.1.S1_at11/112+15753641..15754681MBOAT family protein
LOC_Os02g26850Os.13799.1.S1_at11/112+15756235..15759910conserved eukaryotic protein; DUF652; involved in RNA processing and modification, putative, expressed
LOC_Os02g26860Os.13474.1.S1_at11/112+15764571..15769479membrane related protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12212.1.S1_at--1149--9831Chr02:15742149..15742173 (25 bp)
TACAACTTCACCATTGGCCCACTTT
LOC_Os02g26820
OsAffx.12212.1.S1_at--1065--5711Chr02:15742184..15742208 (25 bp)
GACTGGTGTTCTCACGTATACGGAT
LOC_Os02g26820
OsAffx.12212.1.S1_at--374--7751Chr02:15742188..15742212 (25 bp)
GGTGTTCTCACGTATACGGATGGTG
LOC_Os02g26820
OsAffx.12212.1.S1_at--992--6851Chr02:15742199..15742223 (25 bp)
GTATACGGATGGTGGACTCCGCCTC
LOC_Os02g26820
OsAffx.12212.1.S1_at--849--6252Chr02:15742206..15742230 (25 bp)
GATGGTGGACTCCGCCTCCGTTGAT
LOC_Os02g26820
OsAffx.12212.1.S1_at--1157--1891Chr02:15742264..15742288 (25 bp)
ACGTCTGCCGCTAACTGGTGCTTTC
LOC_Os02g26820
OsAffx.12212.1.S1_at--708--8611Chr02:15742279..15742303 (25 bp)
TGGTGCTTTCGCCTTCATAGTTGGC
LOC_Os02g26820
OsAffx.12212.1.S1_at--1128--10291Chr02:15742285..15742309 (25 bp)
TTTCGCCTTCATAGTTGGCCTGTTA
LOC_Os02g26820
OsAffx.12212.1.S1_at--238--4451Chr02:15742289..15742313 (25 bp)
GCCTTCATAGTTGGCCTGTTATGCC
LOC_Os02g26820
OsAffx.12212.1.S1_at--824--4911Chr02:15742346..15742370 (25 bp)
GCTTGCTTCCGTCGCTGACTAGTGT
LOC_Os02g26820
OsAffx.12212.1.S1_at--521--10651Chr02:15742352..15742376 (25 bp)
TTCCGTCGCTGACTAGTGTTTTCGC
LOC_Os02g26820
Target Sequence 
TACAACTTCACCATTGGCCCACTTTCGCCACCACCGACTGGTGTTCTCACGTATACGGATGGTGGACTCCGCCTCCGTTG
ATGGGCGTCATCGTCATCTTCACCGATCGACCGCCACGTCTGCCGCTAACTGGTGCTTTCGCCTTCATAGTTGGCCTGTT
ATGCCGCTATTGATGGGCGTCTATGTCTTCACCGCCGGCTTGCTTCCGTCGCTGACTAGTGTTTTCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12212.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis