Browse Element(s) Details


Os.13474.1.S1_at

Description gb:CB667542
DB_XREF= gi:29671267
DB_XREF=OSJNEd14O17.r
CLONE=OSJNEd14O17
TID=Os.13474.1
CNT=32
FEA=FLmRNA
TIER=Stack
STK=7
UG=Os.13474 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013146N04, full insert sequence
FL= gb:AK120593.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2686011/11membrane related protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g26820OsAffx.12212.1.S1_at11/112+15741979..15742407hypothetical protein
LOC_Os02g26820Os.40855.5.S1_x_at6/112+15741979..15742407hypothetical protein
LOC_Os02g26830NANA2+15743509..15744081hypothetical protein
LOC_Os02g26840OsAffx.12213.1.S1_at11/112+15753641..15754681MBOAT family protein
LOC_Os02g26850Os.13799.1.S1_at11/112+15756235..15759910conserved eukaryotic protein; DUF652; involved in RNA processing and modification, putative, expressed
LOC_Os02g26860Os.13474.1.S1_at11/112+15764571..15769479membrane related protein, putative, expressed
LOC_Os02g26870NANA2+15774586..15777808retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g26880NANA2+15778673..15780610retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g26890OsAffx.24442.1.S1_at11/112+15782604..15784124pentatricopeptide, putative
LOC_Os02g26900OsAffx.12214.1.S1_at11/112+15790833..15791363hypothetical protein
LOC_Os02g26910NANA2+15793602..15794198hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13474.1.S1_at--445--1451Chr02:15768613..15768634 (22 bp)
AGAAGTTTCCTCAGGCCTTGGAGAC
LOC_Os02g26860
Os.13474.1.S1_at--666--9591Chr02:15768708..15768732 (25 bp)
TCATCACGCCAACAGCCAGGGAAGA
LOC_Os02g26860
Os.13474.1.S1_at--496--8191Chr02:15768727..15768751 (25 bp)
GGAAGAAGTCATCTCGGGCAACGAT
LOC_Os02g26860
Os.13474.1.S1_at--41--5191Chr02:15768753..15768777 (25 bp)
GCAAGTGGACTTCTGCTTATCGGAA
LOC_Os02g26860
Os.13474.1.S1_at--433--8191Chr02:15768774..15768798 (25 bp)
GGAAGCATTGTTTGTCTATCCCGAG
LOC_Os02g26860
Os.13474.1.S1_at--1124--471Chr02:15768791..15768815 (25 bp)
ATCCCGAGGCCGATCTAACCTTGGG
LOC_Os02g26860
Os.13474.1.S1_at--214--7571Chr02:15768814..15768838 (25 bp)
GGGCCCAGCTTGCAATGGCATTCTT
LOC_Os02g26860
Os.13474.1.S1_at--738--7351Chr02:15768903..15768927 (25 bp)
GTGACTGAACCCAGGCACTTGGAAT
LOC_Os02g26860
Os.13474.1.S1_at--467--471Chr02:15769018..15769042 (25 bp)
ATCTGTACACAGCATGACGGATTAT
LOC_Os02g26860
Os.13474.1.S1_at--271--8671Chr02:15769089..15769113 (25 bp)
TGTGGAGTACTACATCGTCTCACTG
LOC_Os02g26860
Os.13474.1.S1_at--461--7151Chr02:15769105..15769129 (25 bp)
GTCTCACTGTAGAAATCGGGTACCT
LOC_Os02g26860
Target Sequence 
AGAAGTTTCCTCAGGCCTTGGAGACTGATGTAGATGCAAATCATCATCCTCAAGGAAATACAAGAGCAAATGTTGTTCCT
ACACATTTTGCAAGAACTTCATCACGCCAACAGCCAGGGAAGAAGTCATCTCGGGCAACGATTGCAAGTGGACTTCTGCT
TATCGGAAGCATTGTTTGTCTATCCCGAGGCCGATCTAACCTTGGGGCCCAGCTTGCAATGGCATTCTTCTTGAAGAAGG
CGTTCAAACAAGATAAAGGATCGAGCTCGCAGAGGAGCATAAGTAGAACTGATGTGACTGAACCCAGGCACTTGGAATAG
TATTGGTTAACCTTGGAGACGTTTTACCTTGACCTTTTCTTCCTCTTTCTTGAGAAAAAGTGGGAATATCGTTTGCTTGA
TAAGGCATATCTGTACACAGCATGACGGATTATGTAAATAATAGGTTTGTAGTTGTCTGTGTTTGCCAATGAGTACTTCT
GTGGAGTACTACATCGTCTCACTGTAGAAATCGGGTACCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13474.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis