Browse Element(s) Details


OsAffx.12214.1.S1_at

Description tigr:9630.m02543
TID=OsAffx.12214.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2690011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g26860Os.13474.1.S1_at11/112+15764571..15769479membrane related protein, putative, expressed
LOC_Os02g26870NANA2+15774586..15777808retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g26880NANA2+15778673..15780610retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g26890OsAffx.24442.1.S1_at11/112+15782604..15784124pentatricopeptide, putative
LOC_Os02g26900OsAffx.12214.1.S1_at11/112+15790833..15791363hypothetical protein
LOC_Os02g26910NANA2+15793602..15794198hypothetical protein
LOC_Os02g26920NANA2+15805055..15811017retrotransposon protein, putative, unclassified
LOC_Os02g26930NANA2+15811640..15814771retrotransposon protein, putative, unclassified
LOC_Os02g26940Os.52372.1.S1_at11/112+15815665..15820107vegetative storage protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12214.1.S1_at--987--5171Chr02:15790867..15790891 (25 bp)
GCAAGTATGTTGTGCGATGTATCAT
LOC_Os02g26900
OsAffx.12214.1.S1_at--998--7291Chr02:15790878..15790902 (25 bp)
GTGCGATGTATCATCCACAGTCGGT
LOC_Os02g26900
OsAffx.12214.1.S1_at--742--6271Chr02:15790882..15790906 (25 bp)
GATGTATCATCCACAGTCGGTACCC
LOC_Os02g26900
OsAffx.12214.1.S1_at--160--571Chr02:15790890..15790914 (25 bp)
ATCCACAGTCGGTACCCCATAGGTA
LOC_Os02g26900
OsAffx.12214.1.S1_at--66--1111Chr02:15790895..15790919 (25 bp)
CAGTCGGTACCCCATAGGTACCAAG
LOC_Os02g26900
OsAffx.12214.1.S1_at--905--10071Chr02:15790909..15790933 (25 bp)
TAGGTACCAAGTTTGATACATGTGG
LOC_Os02g26900
OsAffx.12214.1.S1_at--1028--10251Chr02:15790920..15790944 (25 bp)
TTTGATACATGTGGTATTACCGCTG
LOC_Os02g26900
OsAffx.12214.1.S1_at--987--7491Chr02:15790930..15790954 (25 bp)
GTGGTATTACCGCTGATACCCAGGT
LOC_Os02g26900
OsAffx.12214.1.S1_at--881--4711Chr02:15791004..15791030 (25 bp)
GCTGATACCCAGGTATTAAACCTGA
LOC_Os02g26900
OsAffx.12214.1.S1_at--1096--3911Chr02:15791064..15791308 (25 bp)
CTGGCTGCGAGGTATCGCGTGTGGA
LOC_Os02g26900
OsAffx.12214.1.S1_at--388--7472Chr03:29033805..29033825 (21 bp)
GTGTGGAGGCGCGTGAGACCGAGGA
NONE
Target Sequence 
GCAAGTATGTTGTGCGATGTATCATCCACAGTCGGTACCCCATAGGTACCAAGTTTGATACATGTGGTATTACCGCTGAT
ACCCAGGTATTAAACCTGATACCTGGTACCTGTGAGGTATCAAGTATCATGGCTGGCTGCGAGGTATCGCGTGTGGAGGC
GCGTGAGACCGAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12214.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis