Browse Element(s) Details


Os.13799.1.S1_at

Description gb:AK103767.1
DB_XREF= gi:32988976
TID=Os.13799.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.13799 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033143I02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033143I02, full insert sequence.
FL= gb:AK103767.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2685011/11conserved eukaryotic protein; DUF652; involved in RNA processing and modification, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g26820OsAffx.12212.1.S1_at11/112+15741979..15742407hypothetical protein
LOC_Os02g26820Os.40855.5.S1_x_at6/112+15741979..15742407hypothetical protein
LOC_Os02g26830NANA2+15743509..15744081hypothetical protein
LOC_Os02g26840OsAffx.12213.1.S1_at11/112+15753641..15754681MBOAT family protein
LOC_Os02g26850Os.13799.1.S1_at11/112+15756235..15759910conserved eukaryotic protein; DUF652; involved in RNA processing and modification, putative, expressed
LOC_Os02g26860Os.13474.1.S1_at11/112+15764571..15769479membrane related protein, putative, expressed
LOC_Os02g26870NANA2+15774586..15777808retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g26880NANA2+15778673..15780610retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g26890OsAffx.24442.1.S1_at11/112+15782604..15784124pentatricopeptide, putative

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13799.1.S1_at--444--5391Chr02:15757225..15757249 (25 bp)
GAAGCTACTGAAGGTTCCATCGGAT
LOC_Os02g26850
Os.13799.1.S1_at--547--8351Chr02:15757195..15757219 (25 bp)
GGCGGCTGCCAGTGAAAACGCAAGT
LOC_Os02g26850
Os.13799.1.S1_at--67--3411Chr02:15757156..15757180 (25 bp)
CAGAAGGCCTATCAGTTCTCTTGTA
LOC_Os02g26850
Os.13799.1.S1_at--1074--5231Chr02:15756831..15756855 (25 bp)
GACCAAACCCACTCTCCTGTAAGAA
LOC_Os02g26850
Os.13799.1.S1_at--1098--2351Chr02:15756797..15756821 (25 bp)
AAAGCCCCAATTGTCAGCTGCTCAA
LOC_Os02g26850
Os.13799.1.S1_at--162--9011Chr02:15756478..15756502 (25 bp)
TGCAAAGTTAAGAAACTCTCGCTGC
LOC_Os02g26850
Os.13799.1.S1_at--611--7071Chr02:15756354..15756378 (25 bp)
GTAATGCTTGATTGTTCACAGATAT
LOC_Os02g26850
Os.13799.1.S1_at--504--8771Chr02:15756308..15756332 (25 bp)
TGTATCTGGATGTCTTCTTGTAGCA
LOC_Os02g26850
Os.13799.1.S1_at--542--8751Chr02:15756290..15756314 (25 bp)
TGTAGCAGTTGATGCAACACTGTCT
LOC_Os02g26850
Os.13799.1.S1_at--902--8211Chr02:15756258..15756282 (25 bp)
GGAATTCATGGTGCTACTGCTAATC
LOC_Os02g26850
Os.13799.1.S1_at--1111--7771Chr02:15756249..15756273 (25 bp)
GGTGCTACTGCTAATCTGATAGAAT
LOC_Os02g26850
Target Sequence 
GAAGCTACTGAAGGTTCCATCGGATGGAAAGGCGGCTGCCAGTGAAAACGCAAGTGATGATGAAAAGAACAGAAGGCCTA
TCAGTTCTCTTGTAGAAAATGCACTTGGGGTGGCCGACAAAAGCAAATTTAAGAAGAAAAGACCAAAGGGACCAAACCCA
CTCTCCTGTAAGAAAAAGAAACCAAAGCCCCAATTGTCAGCTGCTCAAAATCAGGGGCCCAAAGCTGATGGGGAGGCAAA
GCGAAAGAGAGTTAGGAAGCGGAAGAGAAGCCACAAAGATAGCAAGCAAACGGAAACAATGAGCTAAGAAAGATGAGCTG
CAAAGTTAAGAAACTCTCGCTGCNTATCCAGAGGCAGAGCTNGGTGGCNCAATGTTTTGAAGATAGAAATCATACTGATC
TCATGNTGTGCCACTCATTGAGTCGNCTGCNTTCTTTGAATTGTAATGCTTGATTGTTCACAGATATTTNTGATAGATCC
GTATAGGATGTATCTGGATGTCTTCTTGTAGCAGTTGATGCAACACTGTCTNTCAAATGGAATTCATGGTGCTACTGCTA
ATCTGATAGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13799.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis