Browse Element(s) Details


OsAffx.24516.1.S1_at

Description tigr:9630.m02961
TID=OsAffx.24516.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3087011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g30850OsAffx.26282.1.S1_s_at11/112+18408428..18409451glutaredoxin family protein, putative, expressed
LOC_Os02g30850Os.53592.1.S1_s_at11/112+18408428..18409451glutaredoxin family protein, putative, expressed
LOC_Os02g30860OsAffx.2814.1.S1_at11/112+18409814..18410331hypothetical protein
LOC_Os02g30870OsAffx.24516.1.S1_at11/112+18413065..18413929hypothetical protein
LOC_Os02g30880NANA2+18421042..18426637retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os02g30890NANA2+18429233..18429433hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24516.1.S1_at--685--8731Chr02:18413715..18413739 (25 bp)
TGTCAATGACCGACTTCGCCTCCAT
LOC_Os02g30870
OsAffx.24516.1.S1_at--981--10631Chr02:18413729..18413753 (25 bp)
TTCGCCTCCATCACCAAAGTGTCAT
LOC_Os02g30870
OsAffx.24516.1.S1_at--261--1111Chr02:18413746..18413770 (25 bp)
AGTGTCATCACTTTACGTTCTTCAG
LOC_Os02g30870
OsAffx.24516.1.S1_at--269--391Chr02:18413752..18413776 (25 bp)
ATCACTTTACGTTCTTCAGTGCCGG
LOC_Os02g30870
OsAffx.24516.1.S1_at--78--9931Chr02:18413759..18413783 (25 bp)
TACGTTCTTCAGTGCCGGCTATCAA
LOC_Os02g30870
OsAffx.24516.1.S1_at--577--4291Chr02:18413809..18413833 (25 bp)
CCTCGTCGATCTTCATAGGCATGGA
LOC_Os02g30870
OsAffx.24516.1.S1_at--456--3651Chr02:18413819..18413843 (25 bp)
CTTCATAGGCATGGACAGCAGCTCG
LOC_Os02g30870
OsAffx.24516.1.S1_at--393--1591Chr02:18413838..18413862 (25 bp)
AGCTCGAGGCACATCCCTGCGACTT
LOC_Os02g30870
OsAffx.24516.1.S1_at--813--6191Chr02:18413843..18413867 (25 bp)
GAGGCACATCCCTGCGACTTGCCTG
LOC_Os02g30870
OsAffx.24516.1.S1_at--41--5691Chr02:18413858..18413882 (25 bp)
GACTTGCCTGACACCGGCTGTGGGC
LOC_Os02g30870
OsAffx.24516.1.S1_at--257--4271Chr02:18413871..18413895 (25 bp)
CCGGCTGTGGGCACGCCTGCGACAA
LOC_Os02g30870
Target Sequence 
TGTCAATGACCGACTTCGCCTCCATCACCAAAGTGTCATCACTTTACGTTCTTCAGTGCCGGCTATCAACCACCTCCTTT
ACGTCGGAACCCCGCCTCGTCGATCTTCATAGGCATGGACAGCAGCTCGAGGCACATCCCTGCGACTTGCCTGACACCGG
CTGTGGGCACGCCTGCGACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24516.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis