Browse Element(s) Details


OsAffx.24518.2.S1_x_at

Description tigr:9630.m02970
TID=OsAffx.24518.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3096011/11hAT family dimerisation domain containing protein
LOC_Os06g4480010/11hAT family dimerisation domain containing protein, expressed
LOC_Os11g396602/11hAT family dimerisation domain containing protein
LOC_Os05g505302/11hypothetical protein
LOC_Os08g232002/11hAT family dimerisation domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g30920NANA2+18463256..18464808hypothetical protein
LOC_Os02g30930OsAffx.12300.1.S1_at11/112+18468625..18470220hypothetical protein
LOC_Os02g30940OsAffx.2815.1.S1_at10/112+18473317..18475479hypothetical protein
LOC_Os02g30950OsAffx.24517.1.S1_at11/112+18484715..18485941hypothetical protein
LOC_Os02g30950OsAffx.18711.1.S1_at1/112+18484715..18485941hypothetical protein
LOC_Os02g30960OsAffx.24518.2.S1_x_at11/112+18489698..18492227hAT family dimerisation domain containing protein
LOC_Os02g30960OsAffx.19258.2.S1_x_at3/112+18489698..18492227hAT family dimerisation domain containing protein
LOC_Os02g30974Os.8606.1.S1_at11/112+18495365..18503763expressed protein
LOC_Os02g30990NANA2+18504922..18508694retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g31000Os.56299.1.S1_at4/112+18509668..18512734retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g31010Os.33661.2.S1_at2/112+18514373..18518146retrotransposon protein, putative, unclassified
LOC_Os02g31010OsAffx.11537.1.S1_at1/112+18514373..18518146retrotransposon protein, putative, unclassified
LOC_Os02g31010OsAffx.17040.2.S1_x_at1/112+18514373..18518146retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24518.2.S1_x_at--919--1492Chr06:27063782..27063806 (25 bp)
AGCAGCAGTTTGCAGATTTCTCGCT
LOC_Os06g44800
OsAffx.24518.2.S1_x_at--912--718Chr11:23123658..23123681 (24 bp)
ATGGGTTTAATTCCTTTGACTCAAT
LOC_Os11g39660
OsAffx.24518.2.S1_x_at--1136--172Chr06:27063684..27063708 (25 bp)
ATTTATGGTAACTCTGCCCCTGAGT
LOC_Os06g44800
OsAffx.24518.2.S1_x_at--275--1712Chr06:27063628..27063652 (25 bp)
ACCAACATCATCATCTTGTGCTGAA
LOC_Os06g44800
OsAffx.24518.2.S1_x_at--716--6712Chr06:27063556..27063580 (25 bp)
GTTCTGTTCCTTCTCTTACTTAGTA
LOC_Os06g44800
OsAffx.24518.2.S1_x_at--126--3132Chr06:27063479..27063555 (25 bp)
AATTTCTTGCTAAACCCTGGACGTG
LOC_Os06g44800
OsAffx.24518.2.S1_x_at--926--5212Chr06:27063429..27063453 (25 bp)
GAATTTGCGTCTTCTTTCCAGGAAA
LOC_Os06g44800
OsAffx.24518.2.S1_x_at--198--2792Chr06:27063400..27063424 (25 bp)
AAGAGTACTGTACTGGTCCATCAAG
LOC_Os06g44800
OsAffx.24518.2.S1_x_at--118--2752Chr06:27063316..27063340 (25 bp)
AAGAAGCTGCTCTTTCACTTGATGA
LOC_Os06g44800
OsAffx.24518.2.S1_x_at--8--3335Chr11:23124098..23124122 (25 bp)
CACTTGATGAGCCTGACCTTGAGAG
LOC_Os11g39660
OsAffx.24518.2.S1_x_at--512--7971Chr02:18489740..18489764 (25 bp)
GGATCTGTCTGCTGATGCTGAACCT
LOC_Os02g30960
Target Sequence 
AGCAGCAGTTTGCAGATTTCTCGCTGTTTGGAAATGGGTTTAATTCCTTTGACTCAATCAAGGATAGAGCTCATTTGGAT
GCAAAGCAATGGTGGGGAATTTATGGTAACTCTGCCCCTGAGTTAAAAAAATTGGCGCTAAAATTACTTGGACAACCAAC
ATCATCATCTTGTGCTGAAAGAAATTGGAGCACCTATGGTTTGATCCATAATTCAATGAGAAACAAGTTCTGTTCCTTCT
CTTACTTAGTAAATTTCTTGCTAAACCCTGGACGTGCTGAAGATTTGGTGTTTGTGCACCAGAATTTGCGTCTTCTTTCC
AGGAAATCTGAAGAGTACTGTACTGGTCCATCAAGAATGTGGGATGTTGGAGGAGACAGCTTTGAGATGTTCGAGGGTGG
TGCTGATTTTCTTCAAGAAGCTGCTCTTTCACTTGATGAGCCTGACCTTGAGAGGGTGCTAGAAGATCTTGGTGCATTGG
ATCTGTCTGCTGATGCTGAACCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24518.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis