Browse Element(s) Details


OsAffx.24591.1.S1_at

Description tigr:9630.m03432
TID=OsAffx.24591.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3600011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g35950Os.8331.1.S1_at11/112+21590776..21596641RNA recognition motif family protein, expressed
LOC_Os02g35960OsAffx.2876.1.S1_at10/112+21599686..21601352hypothetical protein
LOC_Os02g35970NANA2+21602296..21607403transposon protein, putative, Mutator sub-class, expressed
LOC_Os02g35980NANA2+21612438..21612902hypothetical protein
LOC_Os02g36000OsAffx.24591.1.S1_at11/112+21619153..21619856hypothetical protein
LOC_Os02g36010Os.14491.2.S1_x_at5/112+21622344..21626044transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g36010Os.47463.1.S1_x_at5/112+21622344..21626044transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g36020NANA2+21629097..21639191transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24591.1.S1_at--809--9211Chr02:21619262..21619438 (25 bp)
TCCAACACAGATACTGCAGCGAGCT
LOC_Os02g36000
OsAffx.24591.1.S1_at--44--6491Chr02:21619423..21619447 (25 bp)
GATACTGCAGCGAGCTGTACCCGAG
LOC_Os02g36000
OsAffx.24591.1.S1_at--334--1591Chr02:21619435..21619459 (25 bp)
AGCTGTACCCGAGGGTGGCGGCGTA
LOC_Os02g36000
OsAffx.24591.1.S1_at--1158--4091Chr02:21619543..21619567 (25 bp)
CGAAACGGAGGATGTCTGCGGCGTT
LOC_Os02g36000
OsAffx.24591.1.S1_at--1090--751Chr02:21619554..21619578 (25 bp)
ATGTCTGCGGCGTTGGAGACGTCGA
LOC_Os02g36000
OsAffx.24591.1.S1_at--11--10871Chr02:21619566..21619590 (25 bp)
TTGGAGACGTCGACCGGTGATTCTA
LOC_Os02g36000
OsAffx.24591.1.S1_at--717--5751Chr02:21619571..21619595 (25 bp)
GACGTCGACCGGTGATTCTAATAAG
LOC_Os02g36000
OsAffx.24591.1.S1_at--886--4251Chr02:21619579..21619603 (25 bp)
CCGGTGATTCTAATAAGGTGGACAA
LOC_Os02g36000
OsAffx.24591.1.S1_at--842--5591Chr02:21619599..21619623 (25 bp)
GACAAGAGTAGTAGGCGTGGCGGCG
LOC_Os02g36000
OsAffx.24591.1.S1_at--518--9491Chr02:21619648..21619672 (25 bp)
TCTGCGCGGAGCCTGGCAAGCCGGT
LOC_Os02g36000
OsAffx.24591.1.S1_at--755--2931Chr02:21619794..21619818 (25 bp)
AAGGCGCGGTTCAGGGTGAAAGTGA
LOC_Os02g36000
Target Sequence 
TCCAACACAGATACTGCAGCGAGCTGTACCCGAGGGTGGCGGCGTACCGGCGGTGCAACTGGTGCCTGAGGGAGGGACGA
AGGAGAGGCGGCGGCGGAGGGGGCTCCCCGGCGACGGCGACGGCGGCGGCGAAACGGAGGATGTCTGCGGCGTTGGAGAC
GTCGACCGGTGATTCTAATAAGGTGGACAAGAGTAGTAGGCGTGGCGGCGGCGGCGGTTGCTCGAGGTCGGCCTTCTGCG
CGGAGCCTGGCAAGCCGGTGAAGAAGCCCAAGGCCGCCGCCAGCGACGACGACGACGGCGACCGGGTGGTGGTGATGCCA
GTGGATGAGACGGCGGCAACGGCGACGGCGACGGCGTTGGAGAGGAAGCCGCCGGCGAGGAAGGCGCGGTTCAGGGTGAA
AGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24591.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis