Browse Element(s) Details


OsAffx.24637.3.S1_x_at

Description tigr:9630.m03706
TID=OsAffx.24637.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3858011/11Protein phosphatase 2C containing protein, expressed
LOC_Os02g386904/11Protein phosphatase 2C containing protein
LOC_Os02g387101/11Protein phosphatase 2C containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g38540NANA2+23296233..23298128retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g38550NANA2+23298381..23302901retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g38560NANA2+23305152..23306879retrotransposon protein, putative, unclassified
LOC_Os02g38570NANA2+23307510..23310650retrotransposon protein, putative, unclassified
LOC_Os02g38580OsAffx.24637.3.S1_x_at11/112+23320467..23325974Protein phosphatase 2C containing protein, expressed
LOC_Os02g38580Os.25539.1.S1_at5/112+23320467..23325974Protein phosphatase 2C containing protein, expressed
LOC_Os02g38589Os.54542.1.S1_at9/112+23326698..23327831F-box domain containing protein
LOC_Os02g38598NANA2+23328325..23329341hypothetical protein
LOC_Os02g38610NANA2+23331972..23332415retrotransposon protein, putative, unclassified
LOC_Os02g38620NANA2+23334537..23337948retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g38630NANA2+23340907..23345328retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g38640Os.45173.1.S1_x_at5/112+23348757..23350688retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0008287cellular_componentprotein serine/threonine phosphatase complex
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24637.3.S1_x_at--939--554Chr02:23397496..23397520 (25 bp)
ATCCTGGTTCAGTTCAAGCCCGGCG
LOC_Os02g38710
OsAffx.24637.3.S1_x_at--362--7733Chr02:23383903..23383927 (25 bp)
GGTGGATCCCGCTGGATTTGGCACT
LOC_Os02g38690
OsAffx.24637.3.S1_x_at--106--7953Chr02:23383916..23383940 (25 bp)
GGATTTGGCACTGCCGTCTCTAACA
LOC_Os02g38690
OsAffx.24637.3.S1_x_at--79--3913Chr02:23383965..23383989 (25 bp)
CTGGTGCCAGCGACACAAGCGACGA
LOC_Os02g38690
OsAffx.24637.3.S1_x_at--566--1932Chr02:23325541..23325565 (25 bp)
ACGGATGAGGTCGATCCCACTGGCA
LOC_Os02g38580
OsAffx.24637.3.S1_x_at--449--5032Chr02:23325649..23325673 (25 bp)
GCAGTCATCGAGTCCGACGAGGTCG
LOC_Os02g38580
OsAffx.24637.3.S1_x_at--383--6352Chr02:23325679..23325703 (25 bp)
GATGCCACTGCAACGGGCCATCAGG
LOC_Os02g38580
OsAffx.24637.3.S1_x_at--287--7112Chr02:23325713..23325737 (25 bp)
GTCAGCAGGAGGAATTCGACCCAAA
LOC_Os02g38580
OsAffx.24637.3.S1_x_at--999--1252Chr02:23325770..23325794 (25 bp)
AGATTCTTCTTGAACCTTCTTCGGC
LOC_Os02g38580
OsAffx.24637.3.S1_x_at--35--3472Chr02:23325795..23325819 (25 bp)
CAGGGCGAGAAACCCACTTCTGGCT
LOC_Os02g38580
OsAffx.24637.3.S1_x_at--1025--2052Chr02:23325810..23325834 (25 bp)
ACTTCTGGCTCACGCTAAGACGTGT
LOC_Os02g38580
Target Sequence 
ATCCTGGTTCAGTTCAAGCCCGGCGCCTTCCAGTACCAGCTGGTGGATCCCGCTGGATTTGGCACTGCCGTCTCTAACAT
TGCCAGCACCAGTGCTGCGCCGGCTGGTGCCAGCGACACAAGCGACGAGGGCGTCATGGCCGACTCCTGCGCCACGGCTG
ACACCAGCGGCAGTGCCAGGGCTGAGAGCGGCGAGCTCGTCCCCACTCCCAGCGCCAACAACACCGTCACGGATGAGGTC
GATCCCACTGGCACTGTCGCAGCCGACGACAAGGTCGATCCCAACTCCAGCGCCAATGCCGACGCTGACGACGGCGCTCC
CAAACCTTCTCTCGGCGCAGTCATCGAGTCCGACGAGGTCGCCCTCGATGCCACTGCAACGGGCCATCAGGTGGCCGTGC
GTCAGCAGGAGGAATTCGACCCAAAGAAGTGTTGGATCTGCGGAAAAGGCTACAAGAAGATTCTTCTTGAACCTTCTTCG
GCCAGGGCGAGAAACCCACTTCTGGCTCACGCTAAGACGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24637.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis