Browse Element(s) Details


OsAffx.24778.1.S1_s_at

Description tigr:9630.m04695
TID=OsAffx.24778.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4817011/11expressed protein
LOC_Os06g304801/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g48110Os.9747.1.S1_at9/112+29446070..29451884dnaK protein, expressed
LOC_Os02g48116Os.49403.1.S1_at11/112+29452225..29455248expressed protein
LOC_Os02g48122Os.24137.1.A1_at11/112+29457961..29459791expressed protein
LOC_Os02g48130Os.27653.1.S1_at11/112+29459791..29462183expressed protein
LOC_Os02g48140Os.55371.1.S1_at4/112+29462598..29463092Hsp20/alpha crystallin family protein
LOC_Os02g48150Os.54450.1.S1_s_at11/112+29465553..29466701expressed protein
LOC_Os02g48150OsAffx.24777.1.S1_at11/112+29465553..29466701expressed protein
LOC_Os02g48160OsAffx.2996.1.S1_at9/112+29469057..29470272hypothetical protein
LOC_Os02g48170OsAffx.24778.1.S1_s_at11/112+29475597..29476731expressed protein
LOC_Os02g48180Os.5788.1.S1_at11/112+29477591..29489595PDZ domain family protein, expressed
LOC_Os02g48190Os.17323.1.S1_x_at11/112+29496782..29500718expressed protein
LOC_Os02g48190Os.17323.2.S1_at11/112+29496782..29500718expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24778.1.S1_s_at--457--5171Chr02:29475946..29475970 (25 bp)
GCAAGAACAAGAAGTCTGGCCGCGT
LOC_Os02g48170
OsAffx.24778.1.S1_s_at--28--2751Chr02:29475944..29475968 (25 bp)
AAGAACAAGAAGTCTGGCCGCGTCC
LOC_Os02g48170
OsAffx.24778.1.S1_s_at--277--1431Chr02:29475943..29475967 (25 bp)
AGAACAAGAAGTCTGGCCGCGTCCG
LOC_Os02g48170
OsAffx.24778.1.S1_s_at--506--5511Chr02:29475942..29475966 (25 bp)
GAACAAGAAGTCTGGCCGCGTCCGG
LOC_Os02g48170
OsAffx.24778.1.S1_s_at--13--2471Chr02:29475941..29475965 (25 bp)
AACAAGAAGTCTGGCCGCGTCCGGT
LOC_Os02g48170
OsAffx.24778.1.S1_s_at--819--1511Chr02:29475853..29475877 (25 bp)
AGCAGCAAGAACAGACGACGCAGCA
LOC_Os02g48170
OsAffx.24778.1.S1_s_at--668--2751Chr02:29475847..29475871 (25 bp)
AAGAACAGACGACGCAGCAGGCCCC
LOC_Os02g48170
OsAffx.24778.1.S1_s_at--1157--6811Chr02:29475768..29475792 (25 bp)
GTACTTCCGGTACACGCCGTCGCCG
LOC_Os02g48170
OsAffx.24778.1.S1_s_at--600--10591Chr02:29475701..29475725 (25 bp)
TTCTCCGGCGAGTACCGCTACAGCT
LOC_Os02g48170
OsAffx.24778.1.S1_s_at--505--8371Chr02:29475695..29475719 (25 bp)
GGCGAGTACCGCTACAGCTACCCGA
LOC_Os02g48170
OsAffx.24778.1.S1_s_at--224--3492Chr06:17616712..17616732 (21 bp)
CAGGCTCACCACCATCTTCAGCGAG
LOC_Os06g30480
Target Sequence 
GCAAGAACAAGAAGTCTGGCCGCGTCCGGTTCGGCCCCGAGCCGCCGCCACCGGAGCAGCAGCAGCAGCAGCAGCAACAG
CAGCAGCCACCGCAGCAGCAAGAACAGACGACGCAGCAGGCCCCGAACGCCGGCGCCGAGCACGCGCCGGCACGCCACGC
CACGTCGGCGCCGCCGGGGTACTTCCGGTACACGCCGTCGCCGCTGCCGAGGTGGGAGGCGGCGACGCCGAGGCGGCACG
AGTACTTCTCCGGCGAGTACCGCTACAGCTACCCGACGCCGGTGCGCGAGGGGATCTACCGCATGGCCACCGACGCCAAC
AGGCTCACCACCATCTTCAGCGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24778.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis