Browse Element(s) Details


OsAffx.24858.1.S1_at

Description tigr:9630.m05335
TID=OsAffx.24858.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5390011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g53850OsAffx.12631.1.S1_at11/112+32975405..32977751Subtilisin N-terminal Region family protein
LOC_Os02g53860Os.18825.1.S1_at11/112+32979233..32981976subtilase family protein, putative, expressed
LOC_Os02g53870Os.51349.1.S1_at11/112+32985610..32986341expressed protein
LOC_Os02g53870Os.55356.1.S1_x_at1/112+32985610..32986341expressed protein
LOC_Os02g53870Os.35710.2.S1_x_at1/112+32985610..32986341expressed protein
LOC_Os02g53880NANA2+32987710..32987913hypothetical protein
LOC_Os02g53890NANA2+32989888..32990268hypothetical protein
LOC_Os02g53900OsAffx.24858.1.S1_at11/112+32998380..32998763hypothetical protein
LOC_Os02g53910OsAffx.3059.1.S1_at11/112+33002645..33004717Subtilase family protein
LOC_Os02g53920NANA2+33007491..33008047retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g53930Os.47463.1.S1_x_at6/112+33009988..33012249transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g53930Os.14491.2.S1_x_at5/112+33009988..33012249transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g53940NANA2+33014746..33018077transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24858.1.S1_at--897--3072Chr02:32998418..32998442 (25 bp)
AATCAGGGTGTGGTCAACGCAGCCG
LOC_Os02g53900
OsAffx.24858.1.S1_at--854--7491Chr02:32998427..32998451 (25 bp)
GTGGTCAACGCAGCCGGAAGCTCCT
LOC_Os02g53900
OsAffx.24858.1.S1_at--303--9273Chr10:11407339..11407363 (25 bp)
TCCTCCTCAAGAGATCCTGTCGATG
NONE
OsAffx.24858.1.S1_at--1138--9713Chr10:11407345..11407369 (25 bp)
TCAAGAGATCCTGTCGATGTCGACG
NONE
OsAffx.24858.1.S1_at--479--7613Chr10:11407389..11407413 (25 bp)
GGGAAGGGAGCACCAGATCGAGCGA
NONE
OsAffx.24858.1.S1_at--443--1291Chr02:32998543..32998567 (25 bp)
AGATCGAGCGAGGACCTCAACTCAC
LOC_Os02g53900
OsAffx.24858.1.S1_at--295--1751Chr02:32998556..32998580 (25 bp)
ACCTCAACTCACCTGTCGATGTCGA
LOC_Os02g53900
OsAffx.24858.1.S1_at--831--7613Chr10:11407389..11407444 (25 bp)
GGGAAGGGAGCACCTCACCTCTCCA
NONE
OsAffx.24858.1.S1_at--706--1753Chr10:11407436..11407460 (25 bp)
ACCTCTCCATGGCTCGGCGCAAAGG
NONE
OsAffx.24858.1.S1_at--479--852Chr02:32998626..32998650 (25 bp)
ATGGCTCGGCGCAAAGGACGTCGGC
LOC_Os02g53900
OsAffx.24858.1.S1_at--171--7191Chr02:32998688..32998712 (25 bp)
GTCGTTAACCGATTTCGCCCATCGT
LOC_Os02g53900
Target Sequence 
AATCAGGGTGTGGTCAACGCAGCCGGAAGCTCCTCCCCGCATCCCGCCGTCAACCGCCCCCTCCTCCTCAAGAGATCCTG
TCGATGTCGACGCCGATTCATGGGCGGGGTGGGGAAGGGAGCACCAGATCGAGCGAGGACCTCAACTCACCTGTCGATGT
CGACGCCGATTCATGGGCGGGGTGGGGAAGGGAGCACCTCACCTCTCCATGGCTCGGCGCAAAGGACGTCGGCGACCCGC
GACCATCGCCGCCTCCGACCGATTTCACCCGTCGTTAACCGATTTCGCCCATCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24858.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis