Browse Element(s) Details


OsAffx.25045.1.S1_at

Description tigr:9631.m00995
TID=OsAffx.25045.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=acetyltransferase, GNAT family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1081011/11acetyltransferase, GNAT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10780OsAffx.3193.1.S1_at11/113+5487907..5495787XPG I-region family protein, expressed
LOC_Os03g10790OsAffx.25044.1.S1_at11/113+5496709..5501502cytochrome b5 domain-containing protein, putative
LOC_Os03g10800Os.5794.1.S1_a_at11/113+5509785..5513434transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g10810OsAffx.25045.1.S1_at11/113+5517813..5519436acetyltransferase, GNAT family protein, expressed
LOC_Os03g10820OsAffx.12813.1.S1_s_at11/113+5526246..5530487expressed protein
LOC_Os03g10830OsAffx.25046.1.S1_at11/113+5537093..5537856hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0009640biological_processphotomorphogenesis
GO:0009723biological_processresponse to ethylene stimulus
GO:0009734biological_processauxin mediated signaling pathway
GO:0009826biological_processunidimensional cell growth
GO:0008080molecular_functionN-acetyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25045.1.S1_at--462--4711Chr03:5518345..5518369 (25 bp)
GCTGGCGAGCCTCTGGGACTGCGGG
LOC_Os03g10810
OsAffx.25045.1.S1_at--892--9491Chr03:5518193..5518217 (25 bp)
TCTCCGGGTGGTTCGTGTACGGCCT
LOC_Os03g10810
OsAffx.25045.1.S1_at--463--10631Chr03:5518125..5518149 (25 bp)
TTCGCGACGTTCGTCAACATGGCGC
LOC_Os03g10810
OsAffx.25045.1.S1_at--1003--4071Chr03:5518121..5518145 (25 bp)
CGACGTTCGTCAACATGGCGCGCGG
LOC_Os03g10810
OsAffx.25045.1.S1_at--666--1891Chr03:5518119..5518143 (25 bp)
ACGTTCGTCAACATGGCGCGCGGCA
LOC_Os03g10810
OsAffx.25045.1.S1_at--1159--1771Chr03:5518014..5518038 (25 bp)
ACCGAGGACCTGTGGTGCATGAAGC
LOC_Os03g10810
OsAffx.25045.1.S1_at--838--3891Chr03:5518005..5518029 (25 bp)
CTGTGGTGCATGAAGCGGCTGGGCC
LOC_Os03g10810
OsAffx.25045.1.S1_at--606--7191Chr03:5517978..5518002 (25 bp)
GTCGGAGAATCGGACGGCTGGGATT
LOC_Os03g10810
OsAffx.25045.1.S1_at--12--5251Chr03:5517972..5517996 (25 bp)
GAATCGGACGGCTGGGATTGGGCCA
LOC_Os03g10810
OsAffx.25045.1.S1_at--150--8631Chr03:5517960..5517984 (25 bp)
TGGGATTGGGCCAGGTCACCTCCTG
LOC_Os03g10810
OsAffx.25045.1.S1_at--880--31Chr03:5517956..5517980 (25 bp)
ATTGGGCCAGGTCACCTCCTGGCCT
LOC_Os03g10810
Target Sequence 
GCTGGCGAGCCTCTGGGACTGCGGGGGCGTGTTCCGCCTCGAGCTGCGCGGCGCGTCGCGCCTTCGCCGCGCCGCGGCGG
CCGCGACGCGCGCGCTGGACCGCGCGGCGAGGTGGATGCGCGTCCCGTCCGTGCCGGACTTCTTCCGCCCGTTCTCCGGG
TGGTTCGTGTACGGCCTCGGCGGCGACGGCCCCGACGCCGCGGTGGCCGCCGAGGCGCTGTTCGCGACGTTCGTCAACAT
GGCGCGCGGCAGGGCGGCCGCCGTGGCCGTCGAGGTGGCGGCCTGCGACCCGCTCCGCCGCCGCATCCCGCACTGGCGCC
GCCTCTCGTGCACCGAGGACCTGTGGTGCATGAAGCGGCTGGGCCGCGTCGGAGAATCGGACGGCTGGGATTGGGCCAGG
TCACCTCCTGGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25045.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis