Browse Element(s) Details


OsAffx.25078.1.S1_s_at

Description tigr:9631.m01222
TID=OsAffx.25078.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1293011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12890Os.10150.1.S1_at11/113+6927108..6930064Branched-chain-amino-acid aminotransferase 5, chloroplast precursor, putative, expressed
LOC_Os03g12900Os.28127.2.S1_at11/113+6929972..6936503Squalene monooxygenase, putative, expressed
LOC_Os03g12900Os.28127.1.S1_at11/113+6929972..6936503Squalene monooxygenase, putative, expressed
LOC_Os03g12900OsAffx.8676.1.S1_at1/113+6929972..6936503Squalene monooxygenase, putative, expressed
LOC_Os03g12910Os.20969.1.S1_at11/113+6936767..6941707Squalene monooxygenase, putative, expressed
LOC_Os03g12920NANA3+6945583..6946134hypothetical protein
LOC_Os03g12930OsAffx.25078.1.S1_s_at11/113+6953876..6957221expressed protein
LOC_Os03g12930OsAffx.25078.1.S1_at11/113+6953876..6957221expressed protein
LOC_Os03g12930Os.54564.1.S1_at10/113+6953876..6957221expressed protein
LOC_Os03g12940OsAffx.25079.1.S1_at11/113+6959904..6968702Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g12940Os.52614.1.S1_at11/113+6959904..6968702Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g12940Os.8509.1.S1_at1/113+6959904..6968702Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g12950Os.54629.1.S1_at11/113+6971992..6976294ANT, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25078.1.S1_s_at--451--9432Chr06:12918654..12918678 (25 bp)
TCGGTCAACGGCGTGCTTGTTCTCA
NONE
OsAffx.25078.1.S1_s_at--632--10571Chr03:6956630..6956654 (25 bp)
TTCTCACGTTTCTATGGGTCCTAAA
LOC_Os03g12930
OsAffx.25078.1.S1_s_at--740--1191Chr03:6954439..6954463 (25 bp)
AGTATGGTGTTCGTGACCATCCTTC
LOC_Os03g12930
OsAffx.25078.1.S1_s_at--473--5851Chr03:6954425..6954449 (25 bp)
GACCATCCTTCTTGTTCGTGGAATA
LOC_Os03g12930
OsAffx.25078.1.S1_s_at--305--6511Chr03:6954369..6954393 (25 bp)
GATATAGCTATATTCGCCAGATTGA
LOC_Os03g12930
OsAffx.25078.1.S1_s_at--94--1411Chr03:6954315..6954339 (25 bp)
AGACTGCTGGCTAATCATTTGATTT
LOC_Os03g12930
OsAffx.25078.1.S1_s_at--1056--7951Chr03:6954258..6954282 (25 bp)
GGATCATCAGTAAACCTTTCCTCAC
LOC_Os03g12930
OsAffx.25078.1.S1_s_at--920--2751Chr03:6954229..6954253 (25 bp)
AAGACAGCATGCTACCAGTTCAGCA
LOC_Os03g12930
OsAffx.25078.1.S1_s_at--407--2931Chr03:6954157..6954181 (25 bp)
AAGGAATCCCATGTATTCGTCGAAT
LOC_Os03g12930
OsAffx.25078.1.S1_s_at--1057--8491Chr03:6954129..6954153 (25 bp)
TGGAATTTTCTTCCTCTGCACAAAT
LOC_Os03g12930
OsAffx.25078.1.S1_s_at--492--4951Chr03:6954020..6954044 (25 bp)
GCATTTTCTGCTACTCTTTTCTTGA
LOC_Os03g12930
Target Sequence 
TCGGTCAACGGCGTGCTTGTTCTCACGTTTCTATGGGTCCTAAAGGGGCTACTTGAGGTGGTGTGCACATTTGGAAGTAT
GGTGTTCGTGACCATCCTTCTTGTTCGTGGAATATGGTCTGGAGTGACTTACATAAGAGAAAACCGATATAGCTATATTC
GCCAGATTGATAATGATGACAACCGATGGAGCAGAGTACAGACTGCTGGCTAATCATTTGATTTCCTTGACTACATACAT
ACACTTTGCACCAAAGGGATCATCAGTAAACCTTTCCTCACTGTTAAGACAGCATGCTACCAGTTCAGCACCAACTGCCA
ACAGCTGTTGCTATACAGCAGAGTTGAACAAGAACAAAAGGAATCCCATGTATTCGTCGAATAAGTGGAATTTTCTTCCT
CTGCACAAATGCAGGAGGGATGGTTGAGCTGAACAAGATTAATACGCGTGTAAAACAATCCAGCACACTGATGAATGAGA
GCTGCTGCTGTGATGCATTTTCTGCTACTCTTTTCTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25078.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis