Browse Element(s) Details


OsAffx.25197.1.S1_at

Description tigr:9631.m02290
TID=OsAffx.25197.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2291011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g22880Os.25825.1.S1_at11/113+13201376..13204309Nucleolar protein Nop56, putative, expressed
LOC_Os03g22890Os.26043.1.S1_at11/113+13206155..13210903Nucleolar GTP-binding protein 2, putative, expressed
LOC_Os03g22900Os.48420.1.A1_at11/113+13215516..13226730transcriptional activator, putative, expressed
LOC_Os03g22910OsAffx.25197.1.S1_at11/113+13228297..13228654hypothetical protein
LOC_Os03g22919NANA3+13229366..13229698NA
LOC_Os03g22930OsAffx.25198.1.S1_at11/113+13232701..13233234hypothetical protein
LOC_Os03g22940OsAffx.12995.1.S1_at11/113+13235722..13236573expressed protein
LOC_Os03g22950Os.47768.1.S1_at11/113+13237080..13239471Acyl carrier protein, mitochondrial precursor, putative, expressed
LOC_Os03g22960OsAffx.25199.1.S1_at11/113+13242011..13243186expressed protein
LOC_Os03g22970Os.2987.3.S1_x_at3/113+13244334..13248447transposon protein, putative, unclassified
LOC_Os03g22980NANA3+13249024..13250446retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g22990Os.57404.1.S1_at11/113+13251612..13254083F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25197.1.S1_at--153--10591Chr03:13228454..13228606 (25 bp)
TTCTCCCATGCCACGGTTGCATATG
LOC_Os03g22910
OsAffx.25197.1.S1_at--371--3531Chr03:13228448..13228600 (25 bp)
CATGCCACGGTTGCATATGTCCAGT
LOC_Os03g22910
OsAffx.25197.1.S1_at--390--771Chr03:13228432..13228456 (25 bp)
ATGTCCAGTTGAATGTAGAGGCCAG
LOC_Os03g22910
OsAffx.25197.1.S1_at--1009--9214Chr06:12445161..12445182 (22 bp)
TCCAGTTGAATGTAGAGGCCAGCCA
NONE
OsAffx.25197.1.S1_at--606--1231Chr03:13228379..13228450 (25 bp)
AGTTGAATGTAGAGGCCAGCCATGA
LOC_Os03g22910
OsAffx.25197.1.S1_at--1143--10031Chr03:13228370..13228441 (25 bp)
TAGAGGCCAGCCATGAAACAAAAGT
LOC_Os03g22910
OsAffx.25197.1.S1_at--854--5531Chr03:13228356..13228380 (25 bp)
GAAACAAAAGTGGTCAGCACCCTCA
LOC_Os03g22910
OsAffx.25197.1.S1_at--910--2431Chr03:13228351..13228375 (25 bp)
AAAAGTGGTCAGCACCCTCAAGTAT
LOC_Os03g22910
OsAffx.25197.1.S1_at--573--2871Chr03:13228349..13228373 (25 bp)
AAGTGGTCAGCACCCTCAAGTATGA
LOC_Os03g22910
OsAffx.25197.1.S1_at--723--7111Chr03:13228344..13228368 (25 bp)
GTCAGCACCCTCAAGTATGAGGCAG
LOC_Os03g22910
OsAffx.25197.1.S1_at--548--1191Chr03:13228331..13228355 (25 bp)
AGTATGAGGCAGACGAAGCAGACAA
LOC_Os03g22910
Target Sequence 
TTCTCCCATGCCACGGTTGCATATGTCCAGTTGAATGTAGAGGCCAGCCATGAAACAAAAGTGGTCAGCACCCTCAAGTA
TGAGGCAGACGAAGCAGACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25197.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis