Browse Element(s) Details


OsAffx.25368.1.S1_at

Description tigr:9631.m03417
TID=OsAffx.25368.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3575011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g35720OsAffx.1647.1.S1_at11/113+19738530..19741290retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g35720OsAffx.29148.1.S1_at2/113+19738530..19741290retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g35730NANA3+19749058..19751728hypothetical protein
LOC_Os03g35740OsAffx.22699.1.S1_x_at3/113+19753467..19758173retrotransposon protein, putative, unclassified
LOC_Os03g35740Os.45161.1.A1_x_at1/113+19753467..19758173retrotransposon protein, putative, unclassified
LOC_Os03g35750OsAffx.25368.1.S1_at11/113+19762222..19762578hypothetical protein
LOC_Os03g35769OsAffx.30405.1.S1_x_at1/113+19776567..19780684hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25368.1.S1_at--497--9574Chr07:26102604..26102628 (25 bp)
TCTTCTTTTCTCTGCCTCACAGTGA
NONE
OsAffx.25368.1.S1_at--560--10375Chr07:26102609..26102633 (25 bp)
TTTTCTCTGCCTCACAGTGAGCCGA
NONE
OsAffx.25368.1.S1_at--395--9195Chr07:26102616..26102640 (25 bp)
TGCCTCACAGTGAGCCGAGAGAAGA
NONE
OsAffx.25368.1.S1_at--734--4673Chr07:26102698..26102722 (25 bp)
GCGGCGAAACGTGTTCCCGAGCGAC
NONE
OsAffx.25368.1.S1_at--221--23916Chr11:4200501..4200520 (20 bp)
AAACGTGTTCCCGAGCGACGCGCAT
NONE
OsAffx.25368.1.S1_at--85--4094Chr07:26102715..26102977 (25 bp)
CGAGCGACGCGCATCCAGAGAAGAG
NONE
OsAffx.25368.1.S1_at--180--4591Chr03:19762386..19762410 (25 bp)
GCGCATCCAGAGAAGAGGTCGGCTA
LOC_Os03g35750
OsAffx.25368.1.S1_at--790--9211Chr03:19762381..19762405 (25 bp)
TCCAGAGAAGAGGTCGGCTAGCGAA
LOC_Os03g35750
OsAffx.25368.1.S1_at--179--1332Chr07:26102740..26102760 (21 bp)
AGAGGTCGGCTAGCGAAGGAAACAA
NONE
OsAffx.25368.1.S1_at--825--3731Chr03:19762318..19762342 (25 bp)
CTCAACTCCGGCCATAAAAGAAGTG
LOC_Os03g35750
OsAffx.25368.1.S1_at--252--3574Chr07:26102804..26102827 (24 bp)
CATAAAAGAAGTGGCTGTGGTGGTT
NONE
Target Sequence 
TCTTCTTTTCTCTGCCTCACAGTGAGCCGAGAGAAGAGAGAGGAGAGGGCAAGCGGGGCGTCGGCTCTCCGGTGGCCGGA
AGGCGGCGAAGTCGGCGGCGAAACGTGTTCCCGAGCGACGCGCATCCAGAGAAGAGGTCGGCTAGCGAAGGAAACAAAGG
AGGAGGCCGGAACGGCGACGGCAGGAGCTCAACTCCGGCCATAAAAGAAGTGGCTGTGGTGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25368.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis