Browse Element(s) Details


OsAffx.25399.1.S1_at

Description tigr:9631.m03597
TID=OsAffx.25399.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3752011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g37490Os.6998.1.S1_at11/113+20747776..20754379MATE efflux family protein, expressed
LOC_Os03g37500NANA3+20759571..20766975retrotransposon protein, putative, unclassified
LOC_Os03g37520OsAffx.25399.1.S1_at11/113+20770570..20771257hypothetical protein
LOC_Os03g37540OsAffx.25401.1.S1_at11/113+20776641..20778676hypothetical protein
LOC_Os03g37554Os.40288.1.S1_x_at1/113+20781198..20788366retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g37554Os.41248.4.S1_x_at1/113+20781198..20788366retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g37570Os.9559.1.S1_at11/113+20792579..20794424expressed protein
LOC_Os03g37570OsAffx.3422.1.S1_s_at11/113+20792579..20794424expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25399.1.S1_at--151--3371Chr03:20771094..20771118 (25 bp)
CACCGGTGAGGTCGGCCTCAATCCG
LOC_Os03g37520
OsAffx.25399.1.S1_at--625--7391Chr03:20771089..20771113 (25 bp)
GTGAGGTCGGCCTCAATCCGTGCCG
LOC_Os03g37520
OsAffx.25399.1.S1_at--981--8411Chr03:20771081..20771105 (25 bp)
GGCCTCAATCCGTGCCGCTGGGAGC
LOC_Os03g37520
OsAffx.25399.1.S1_at--575--4131Chr03:20771066..20771090 (25 bp)
CGCTGGGAGCTCACCGGCTGCGCTA
LOC_Os03g37520
OsAffx.25399.1.S1_at--896--1571Chr03:20771059..20771083 (25 bp)
AGCTCACCGGCTGCGCTAGGCTTGA
LOC_Os03g37520
OsAffx.25399.1.S1_at--887--1771Chr03:20771054..20771078 (25 bp)
ACCGGCTGCGCTAGGCTTGATCCGC
LOC_Os03g37520
OsAffx.25399.1.S1_at--762--4771Chr03:20771050..20771074 (25 bp)
GCTGCGCTAGGCTTGATCCGCGCCT
LOC_Os03g37520
OsAffx.25399.1.S1_at--925--10771Chr03:20771038..20771062 (25 bp)
TTGATCCGCGCCTGCCACGTGAGGC
LOC_Os03g37520
OsAffx.25399.1.S1_at--177--4411Chr03:20771025..20771049 (25 bp)
GCCACGTGAGGCCACTCCATGGACA
LOC_Os03g37520
OsAffx.25399.1.S1_at--216--1911Chr03:20771022..20771046 (25 bp)
ACGTGAGGCCACTCCATGGACACCA
LOC_Os03g37520
OsAffx.25399.1.S1_at--965--3351Chr03:20771002..20771026 (25 bp)
CACCACCGTCGACGATATTGGGAGT
LOC_Os03g37520
Target Sequence 
CACCGGTGAGGTCGGCCTCAATCCGTGCCGCTGGGAGCTCACCGGCTGCGCTAGGCTTGATCCGCGCCTGCCACGTGAGG
CCACTCCATGGACACCACCGTCGACGATATTGGGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25399.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis