Browse Element(s) Details


OsAffx.25451.1.S1_at

Description gb:NM_184840.1
DB_XREF= gi:34896769
TID=OsAffx.25451.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0015G17.7), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4047011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g40450Os.16091.1.S1_at5/113+22423845..22424454expressed protein
LOC_Os03g40460NANA3+22429152..22432739hypothetical protein
LOC_Os03g40470OsAffx.25451.1.S1_at11/113+22448832..22449116hypothetical protein
LOC_Os03g40480Os.47463.1.S1_x_at6/113+22451817..22458984transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g40480Os.14491.2.S1_x_at4/113+22451817..22458984transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g40490NANA3+22466870..22467154hypothetical protein
LOC_Os03g40500Os.47463.1.S1_x_at1/113+22468261..22470600transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g40510NANA3+22473715..22476810transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25451.1.S1_at--155--6131Chr03:22449022..22449046 (25 bp)
GAGGTGGTTGCAGCGTCGCCTACTC
LOC_Os03g40470
OsAffx.25451.1.S1_at--182--7511Chr03:22449019..22449043 (25 bp)
GTGGTTGCAGCGTCGCCTACTCCTC
LOC_Os03g40470
OsAffx.25451.1.S1_at--290--4551Chr03:22448941..22448965 (25 bp)
GCCCAGATCCGATGGCGACAACGGA
LOC_Os03g40470
OsAffx.25451.1.S1_at--232--9291Chr03:22448934..22448958 (25 bp)
TCCGATGGCGACAACGGAGAGGACC
LOC_Os03g40470
OsAffx.25451.1.S1_at--410--2211Chr03:22448924..22448948 (25 bp)
ACAACGGAGAGGACCGCAGGGCCAC
LOC_Os03g40470
OsAffx.25451.1.S1_at--280--6031Chr03:22448918..22448942 (25 bp)
GAGAGGACCGCAGGGCCACCCAGAT
LOC_Os03g40470
OsAffx.25451.1.S1_at--588--1091Chr03:22448907..22448931 (25 bp)
AGGGCCACCCAGATCTGGCAGTGAC
LOC_Os03g40470
OsAffx.25451.1.S1_at--1027--1811Chr03:22448901..22448925 (25 bp)
ACCCAGATCTGGCAGTGACAGCGGA
LOC_Os03g40470
OsAffx.25451.1.S1_at--731--4351Chr03:22448899..22448923 (25 bp)
CCAGATCTGGCAGTGACAGCGGAGA
LOC_Os03g40470
OsAffx.25451.1.S1_at--491--1331Chr03:22448877..22448901 (25 bp)
AGAGGACCACGGTGGTCACCAGCAG
LOC_Os03g40470
OsAffx.25451.1.S1_at--439--971Chr03:22448875..22448899 (25 bp)
AGGACCACGGTGGTCACCAGCAGCG
LOC_Os03g40470
Target Sequence 
GAGGTGGTTGCAGCGTCGCCTACTCCTCCGCCATCCTCCCCTCCGGCCCCTCTCTCCCGGTGGAGGAGGACCGCAGCGGC
CGCCCAGATCCGATGGCGACAACGGAGAGGACCGCAGGGCCACCCAGATCTGGCAGTGACAGCGGAGAGGACCACGGTGG
TCACCAGCAGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25451.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis