Browse Element(s) Details


OsAffx.25550.1.S1_at

Description tigr:9631.m04346
TID=OsAffx.25550.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4492011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g44900Os.8777.1.S1_at11/113+25288519..25299205Not1 N-terminal domain, CCR4-Not complex component family protein, expressed
LOC_Os03g44910OsAffx.3516.1.S1_x_at11/113+25309533..25310171hypothetical protein
LOC_Os03g44920OsAffx.25550.2.S1_s_at11/113+25310883..25312427F-box domain containing protein
LOC_Os03g44920OsAffx.25550.1.S1_at11/113+25310883..25312427F-box domain containing protein
LOC_Os03g44930OsAffx.25548.1.S1_at11/113+25319731..25321556hypothetical protein
LOC_Os03g44934NANA3+25322949..25323476hypothetical protein
LOC_Os03g44940NANA3+25326954..25329566retrotransposon protein, putative, unclassified
LOC_Os03g44950NANA3+25331302..25335455expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25550.1.S1_at--295--10491Chr03:25311352..25311376 (25 bp)
TTAAGCCCCTGCTTCTACGTTTGAA
LOC_Os03g44920
OsAffx.25550.1.S1_at--1105--3331Chr03:25311346..25311370 (25 bp)
CCCTGCTTCTACGTTTGAACCGTAG
LOC_Os03g44920
OsAffx.25550.1.S1_at--527--4751Chr03:25311342..25311366 (25 bp)
GCTTCTACGTTTGAACCGTAGCAAA
LOC_Os03g44920
OsAffx.25550.1.S1_at--996--9911Chr03:25311337..25311361 (25 bp)
TACGTTTGAACCGTAGCAAACAAGT
LOC_Os03g44920
OsAffx.25550.1.S1_at--506--8031Chr03:25311252..25311276 (25 bp)
GGAGTGGAATTTATACAATCAGAAC
LOC_Os03g44920
OsAffx.25550.1.S1_at--377--8211Chr03:25311247..25311271 (25 bp)
GGAATTTATACAATCAGAACTATGA
LOC_Os03g44920
OsAffx.25550.1.S1_at--148--2411Chr03:25310978..25311002 (25 bp)
AAACACTATGAACACTTCGCCGAAC
LOC_Os03g44920
OsAffx.25550.1.S1_at--537--3311Chr03:25310975..25310999 (25 bp)
CACTATGAACACTTCGCCGAACATG
LOC_Os03g44920
OsAffx.25550.1.S1_at--954--5491Chr03:25310969..25310993 (25 bp)
GAACACTTCGCCGAACATGAACACA
LOC_Os03g44920
OsAffx.25550.1.S1_at--1071--2031Chr03:25310965..25310989 (25 bp)
ACTTCGCCGAACATGAACACATATG
LOC_Os03g44920
OsAffx.25550.1.S1_at--701--4151Chr03:25310961..25310985 (25 bp)
CGCCGAACATGAACACATATGCCAG
LOC_Os03g44920
Target Sequence 
TTAAGCCCCTGCTTCTACGTTTGAACCGTAGCAAACAAGTTTATGGACCGTGGATCTTAAGGGATATTAACTATCATCTT
TATAGCCAAAAGTTTCCAGGGGAGTGGAATTTATACAATCAGAACTATGATCCCTCTCATTTTCATTCTCCAAACGATGA
AGCACCAACGGAAAATAATTTTGAATGGCATTCCGACGATGATGATATTGTAGACAATCAATGCAACAGTGAAGAGCGTA
ATAGTGGTGACTACCTTACGTTTCTTGGATTTCACCCTTACAAAGAGGTTGTCTTTATGTCTTCTGGATCAATGAAAGGA
TTCGCCTACCATTTGAAAAGCTCAAAACTTCAATGTTTGGGTAACTTATACCCAAAACACTATGAACACTTCGCCGAACA
TGAACACATATGCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25550.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis