Browse Element(s) Details


OsAffx.25550.2.S1_s_at

Description tigr:9631.m04352
TID=OsAffx.25550.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4498011/11F-box domain containing protein
LOC_Os03g4492011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g44940NANA3+25326954..25329566retrotransposon protein, putative, unclassified
LOC_Os03g44950NANA3+25331302..25335455expressed protein
LOC_Os03g44970OsAffx.25549.1.S1_at11/113+25342628..25342984hypothetical protein
LOC_Os03g44974OsAffx.7693.1.S1_x_at1/113+25344284..25344547hypothetical protein
LOC_Os03g44980OsAffx.25550.2.S1_s_at11/113+25349495..25351039F-box domain containing protein
LOC_Os03g44980OsAffx.25550.2.S1_at11/113+25349495..25351039F-box domain containing protein
LOC_Os03g44990NANA3+25355505..25356797hypothetical protein
LOC_Os03g45000NANA3+25357313..25361103hypothetical protein
LOC_Os03g45010NANA3+25363803..25364261hypothetical protein
LOC_Os03g45030Os.52609.1.S1_at1/113+25367778..25373250retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g45040NANA3+25374904..25378017hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25550.2.S1_s_at--1156--7672Chr03:25350444..25350468 (25 bp)
GGGTATACCTTGCATCACTTACAAT
LOC_Os03g44980
OsAffx.25550.2.S1_s_at--37--6252Chr03:25350470..25350494 (25 bp)
GATGGTCGCCTTTCGATTTGGGTCC
LOC_Os03g44980
OsAffx.25550.2.S1_s_at--700--212Chr03:25350485..25350509 (25 bp)
ATTTGGGTCCTCGATGAATCATGTG
LOC_Os03g44980
OsAffx.25550.2.S1_s_at--319--3233Chr03:25350581..25350605 (25 bp)
CAAGTTTATGGACCGTGGATCTTAA
LOC_Os03g44980
OsAffx.25550.2.S1_s_at--789--5473Chr08:16479294..16479318 (25 bp)
GAACTATGATCCCTCTCATTTTCAT
NONE
OsAffx.25550.2.S1_s_at--136--3772Chr03:25350679..25350703 (25 bp)
CTCTCATTTTCATTCTCCAAACGAT
LOC_Os03g44980
OsAffx.25550.2.S1_s_at--958--5832Chr03:25350779..25350803 (25 bp)
GAGCGTAATAGTGGTGACTACCTTA
LOC_Os03g44980
OsAffx.25550.2.S1_s_at--8--7932Chr03:25350832..25350856 (25 bp)
GGTTGTCTTTATGTCTTCTGGATCA
LOC_Os03g44980
OsAffx.25550.2.S1_s_at--625--2893Chr03:25350861..25350885 (25 bp)
AAGGATTCGCCTACCATTTGAAAAG
LOC_Os03g44980
OsAffx.25550.2.S1_s_at--1047--332Chr03:25350972..25350996 (25 bp)
ATACACCGTGCTGGGTTGATGAGCT
LOC_Os03g44980
OsAffx.25550.2.S1_s_at--982--7892Chr03:25350985..25351009 (25 bp)
GGTTGATGAGCTGCCTGAAACTAGT
LOC_Os03g44980
Target Sequence 
GGGTATACCTTGCATCACTTACAATAGATGGTCGCCTTTCGATTTGGGTCCTCGATGAATCATGTGGTCAGTTTAAGTGG
GTATTGGAGCACCAAAACAACCTCAAGCCCCTGCTGCTAGGTCTGAACCGCAGCAAACAAGTTTATGGACCGTGGATCTT
AAGGGATATTAACTATCATCTTTATAGCCAAAAGTTTCCAGGGGAGTGGGATTTATACGATCGGAACTATGATCCCTCTC
ATTTTCATTCTCCAAACGATGAAGCACCAGCGGAAAATAATTTTGAATGGCATTCCGACGATGATGATATTATAGACAAC
CAATGCAACAGTGAAGAGCGTAATAGTGGTGACTACCTTACATTTCTTGGATTTCACCCTTACAAAGAGGTTGTCTTTAT
GTCTTCTGGATCAATGAAAGGATTCGCCTACCATTTGAAAAGCTCAAAGCTTCAATGTTTGGGTAACTTATACCCAAAAC
ACTATAAACACTTTGCCCAACATGAAGACATATGCCAGTCATTTCTGTATACACCGTGCTGGGTTGATGAGCTGCCTGAA
ACTAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25550.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis