Browse Element(s) Details


OsAffx.2560.1.S1_at

Description tigr:9630.m00904
TID=OsAffx.2560.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0988011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g09860NANA2+5090349..5091312retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g09870NANA2+5094976..5098828retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g09880OsAffx.2560.1.S1_at11/112+5112712..5112942hypothetical protein
LOC_Os02g09890Os.17412.1.S1_at11/112+5118281..5121509expressed protein
LOC_Os02g09900Os.26759.1.S1_at11/112+5121678..5125732transposon protein, putative, Mutator sub-class, expressed
LOC_Os02g09910OsAffx.11965.1.S1_at11/112+5131555..5132334PHD-finger family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2560.1.S1_at--361--5971Chr02:5112778..5112802 (25 bp)
GAGAAGAAGCGCACGCGGAATACGC
LOC_Os02g09880
OsAffx.2560.1.S1_at--902--5411Chr02:5112783..5112807 (25 bp)
GAAGCGCACGCGGAATACGCGCGAA
LOC_Os02g09880
OsAffx.2560.1.S1_at--576--1651Chr02:5112785..5112809 (25 bp)
AGCGCACGCGGAATACGCGCGAACG
LOC_Os02g09880
OsAffx.2560.1.S1_at--49--171Chr02:5112816..5112840 (25 bp)
ATTATTCCCGCGCAAGTTGCAGCTG
LOC_Os02g09880
OsAffx.2560.1.S1_at--1084--10211Chr02:5112818..5112842 (25 bp)
TATTCCCGCGCAAGTTGCAGCTGCG
LOC_Os02g09880
OsAffx.2560.1.S1_at--1029--1591Chr02:5112836..5112860 (25 bp)
AGCTGCGCGCGTTAGCTGCTATTGC
LOC_Os02g09880
OsAffx.2560.1.S1_at--867--10411Chr02:5112847..5112871 (25 bp)
TTAGCTGCTATTGCGCGGTTTCGAC
LOC_Os02g09880
OsAffx.2560.1.S1_at--741--4871Chr02:5112853..5112877 (25 bp)
GCTATTGCGCGGTTTCGACGGTGGG
LOC_Os02g09880
OsAffx.2560.1.S1_at--303--7671Chr02:5112876..5112900 (25 bp)
GGGATTTGATCACACGTTTCTCGAC
LOC_Os02g09880
OsAffx.2560.1.S1_at--107--6531Chr02:5112878..5112902 (25 bp)
GATTTGATCACACGTTTCTCGACCC
LOC_Os02g09880
OsAffx.2560.1.S1_at--804--10771Chr02:5112881..5112905 (25 bp)
TTGATCACACGTTTCTCGACCCCTT
LOC_Os02g09880
Target Sequence 
GAGAAGAAGCGCACGCGGAATACGCGCGAACGGGGGGGATTATTCCCGCGCAAGTTGCAGCTGCGCGCGTTAGCTGCTAT
TGCGCGGTTTCGACGGTGGGGATTTGATCACACGTTTCTCGACCCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2560.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis