Browse Element(s) Details


OsAffx.25647.1.S1_at

Description tigr:9638.m02132
TID=OsAffx.25647.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g252608/11hypothetical protein
LOC_Os03g497403/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g25230Os.46849.1.S1_at11/1110+12699796..12700622ZIM motif family protein, expressed
LOC_Os10g25250OsAffx.30526.1.S1_x_at9/1110+12711517..12715593ZIM motif family protein
LOC_Os10g25250OsAffx.30526.1.S1_at9/1110+12711517..12715593ZIM motif family protein
LOC_Os10g25250OsAffx.17718.1.A1_at3/1110+12711517..12715593ZIM motif family protein
LOC_Os10g25250OsAffx.11600.1.S1_at1/1110+12711517..12715593ZIM motif family protein
LOC_Os10g25260OsAffx.25647.1.S1_x_at9/1110+12720484..12722196hypothetical protein
LOC_Os10g25260OsAffx.25647.1.S1_at8/1110+12720484..12722196hypothetical protein
LOC_Os10g25260OsAffx.25647.2.S1_at3/1110+12720484..12722196hypothetical protein
LOC_Os10g25270OsAffx.20387.1.S1_x_at11/1110+12727647..12728284retrotransposon protein, putative, unclassified
LOC_Os10g25280NANA10+12728537..12731704retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g25290Os.12012.1.S1_at11/1110+12738382..12739510ZIM motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25647.1.S1_at--258--9891Chr10:12722032..12722056 (25 bp)
TACTTTGACGCCACTCAAACTCCAT
LOC_Os10g25260
OsAffx.25647.1.S1_at--14--7211Chr10:12721938..12721962 (25 bp)
GTCGTTGTCCTCGTCGTTGGAGCCC
LOC_Os10g25260
OsAffx.25647.1.S1_at--915--8652Chr03:28262239..28262497 (25 bp)
TGTGGCCAGCCGCAGGCTGTACTCT
LOC_Os03g49740
OsAffx.25647.1.S1_at--653--1672Chr03:28262246..28262504 (25 bp)
AGCCGCAGGCTGTACTCTTCTTGGA
LOC_Os03g49740
OsAffx.25647.1.S1_at--217--4132Chr03:28262486..28262507 (22 bp)
CGCAGGCTGTACTCTTCTTGGACTG
LOC_Os03g49740
OsAffx.25647.1.S1_at--81--5831Chr10:12721162..12721183 (22 bp)
GACCGAGTCAAGCTAGCCACGTGGC
LOC_Os10g25260
OsAffx.25647.1.S1_at--801--4231Chr10:12721162..12721181 (20 bp)
CCGAGTCAAGCTAGCCACGTGGCAA
LOC_Os10g25260
OsAffx.25647.1.S1_at--17--1171NONE
AGTCAAGCTAGCCACGTGGCAACAA
NONE
OsAffx.25647.1.S1_at--218--2711NONE
AAGCTAGCCACGTGGCAACAACTCT
NONE
OsAffx.25647.1.S1_at--196--9991NONE
TAGCCACGTGGCAACAACTCTTTTC
NONE
OsAffx.25647.1.S1_at--2--4371Chr10:12720536..12720556 (21 bp)
CCACGTGGCAACAACTCTTTTCTGG
LOC_Os10g25260
Target Sequence 
TACTTTGACGCCACTCAAACTCCATCTCCTTCTCGAGCGCGGTGGCAATGGTGGACAACGGCTTCTTGGCGTGCGCCGTG
GCGATGGCGCCGGAGTCGTTGTCCTCGTCGTTGGAGCCCGCAGTCGGGCGCTCCGACTCCTCCTGTGGCCAGCCGCAGGC
TGTACTCTTCTTGGACTGGAAGCAGCTTCGGCCTATGATCCAATCAAGCGCATGATTCCAGTAGCAGAGGAGGTAGTCAA
GGCTAGAGAGATTGTAACCAAAGGTGGGGCCGCCGGGAGTCGACCGTGCCCTCCAATCCCGATCGAATTGCCACGTAAGC
GGCACGTCAATGCCACGTCAGATGAAGACCGAGTCAAGCTAGCCACGTGGCAACAACTCTTTTCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25647.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis