Browse Element(s) Details


Os.12012.1.S1_at

Description gb:AK061602.1
DB_XREF= gi:32971620
TID=Os.12012.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12012 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-027-G06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-027-G06, full insert sequence.
FL= gb:AK061602.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2529011/11ZIM motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g25250OsAffx.30526.1.S1_x_at9/1110+12711517..12715593ZIM motif family protein
LOC_Os10g25250OsAffx.30526.1.S1_at9/1110+12711517..12715593ZIM motif family protein
LOC_Os10g25250OsAffx.17718.1.A1_at3/1110+12711517..12715593ZIM motif family protein
LOC_Os10g25250OsAffx.11600.1.S1_at1/1110+12711517..12715593ZIM motif family protein
LOC_Os10g25260OsAffx.25647.1.S1_x_at9/1110+12720484..12722196hypothetical protein
LOC_Os10g25260OsAffx.25647.1.S1_at8/1110+12720484..12722196hypothetical protein
LOC_Os10g25260OsAffx.25647.2.S1_at3/1110+12720484..12722196hypothetical protein
LOC_Os10g25270OsAffx.20387.1.S1_x_at11/1110+12727647..12728284retrotransposon protein, putative, unclassified
LOC_Os10g25280NANA10+12728537..12731704retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g25290Os.12012.1.S1_at11/1110+12738382..12739510ZIM motif family protein, expressed
LOC_Os10g25300Os.46392.1.S1_s_at11/1110+12749285..12752443expressed protein
LOC_Os10g25300Os.40388.1.S1_at9/1110+12749285..12752443expressed protein
LOC_Os10g25300Os.40388.2.S1_x_at8/1110+12749285..12752443expressed protein
LOC_Os10g25300Os.40388.2.S1_s_at3/1110+12749285..12752443expressed protein
LOC_Os10g25300Os.4648.1.S1_at1/1110+12749285..12752443expressed protein
LOC_Os10g25300OsAffx.19167.1.A1_at1/1110+12749285..12752443expressed protein
LOC_Os10g25310Os.46838.1.S1_at10/1110+12757461..12760085SPX domain containing protein, expressed
LOC_Os10g25320Os.17550.1.S1_at11/1110+12759672..12765320Initiation factor 2 subunit family protein, expressed
LOC_Os10g25320Os.17550.2.S1_x_at11/1110+12759672..12765320Initiation factor 2 subunit family protein, expressed
LOC_Os10g25320Os.56122.1.S1_at11/1110+12759672..12765320Initiation factor 2 subunit family protein, expressed
LOC_Os10g25320Os.22711.1.A1_at1/1110+12759672..12765320Initiation factor 2 subunit family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12012.1.S1_at--881--4551Chr10:12739046..12739070 (25 bp)
GCGCTCCCGGAGATGCCGATCGCGA
LOC_Os10g25290
Os.12012.1.S1_at--833--7951Chr10:12738778..12738802 (25 bp)
GGATCACGACAACGAGCGAACCATA
LOC_Os10g25290
Os.12012.1.S1_at--1007--3471Chr10:12738679..12738703 (25 bp)
CATGGCTCGGGCTCTGAAGATTTAT
LOC_Os10g25290
Os.12012.1.S1_at--117--5351Chr10:12738664..12738688 (25 bp)
GAAGATTTATCTGCCCGGTTTAGAG
LOC_Os10g25290
Os.12012.1.S1_at--724--6991Chr10:12738605..12738629 (25 bp)
GTACTGACTAAATTGTTGTTTTCCA
LOC_Os10g25290
Os.12012.1.S1_at--740--6791Chr10:12738588..12738612 (25 bp)
GTTTTCCATGATTTAAGTTCGTCTC
LOC_Os10g25290
Os.12012.1.S1_at--319--2831Chr10:12738574..12738598 (25 bp)
AAGTTCGTCTCTGTTTGAGATTTCT
LOC_Os10g25290
Os.12012.1.S1_at--1156--8871Chr10:12738559..12738583 (25 bp)
TGAGATTTCTTTGGCCCAAACCCAA
LOC_Os10g25290
Os.12012.1.S1_at--614--3291Chr10:12738537..12738561 (25 bp)
CAAAGAGTTCTTTCACTGATTTAAG
LOC_Os10g25290
Os.12012.1.S1_at--1130--10491Chr10:12738517..12738541 (25 bp)
TTAAGTGATTATTTCCTCCACTAGA
LOC_Os10g25290
Os.12012.1.S1_at--720--1171Chr10:12738436..12738460 (25 bp)
AGTACAACTGTCTCCATTTCTATGC
LOC_Os10g25290
Target Sequence 
GCGCTCCCGGAGATGCCGATCGCGAGGAAGGCGTCGCTGCAGCGTTTCCTCCAGAAGAGGAAGCACAGGATCACGACAAC
GAGCGAACCATACAAGAAGGCGGCGGTGGCGTCGCCGGCGCCGGAGAAAAGCTTCGCCGTCGCGCCGGTGAAAGATGAGC
CGGCGACATGGCTCGGGCTCTGAAGATTTATCTGCCCGGTTTAGAGGAGGAGAATATCACAAAGGGAGAAAAAAAATTAA
GTACTGACTAAATTGTTGTTTTCCATGATTTAAGTTCGTCTCTGTTTGAGATTTCTTTGGCCCAAACCCAAAGAGTTCTT
TCACTGATTTAAGTGATTATTTCCTCCACTAGAGCATATACAGTGTTCTGAAAAATAATGGTAGATTTATCCATTTTTGT
TGATGTACAAGTACAACTGTCTCCATTTCTATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12012.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis