Browse Element(s) Details


Os.22711.1.A1_at

Description gb:AK108557.1
DB_XREF= gi:32993766
TID=Os.22711.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.22711 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-144-E12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-144-E12, full insert sequence.
FL= gb:AK108557.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0635010/11uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os10g253201/11Initiation factor 2 subunit family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g06290OsAffx.24991.1.S1_x_at11/113+3130625..3135429PA domain containing protein, expressed
LOC_Os03g06290Os.5657.2.S1_at11/113+3130625..3135429PA domain containing protein, expressed
LOC_Os03g06300NANA3+3135948..3137420pentatricopeptide, putative, expressed
LOC_Os03g06310OsAffx.24992.1.S1_at11/113+3137810..3139942Subtilisin N-terminal Region family protein
LOC_Os03g06320OsAffx.3148.1.S1_at11/113+3141025..3142682hypothetical protein
LOC_Os03g06330Os.16915.1.S1_at11/113+3144377..3147998Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os03g06340Os.12465.1.S1_at11/113+3149214..3155533XS domain containing protein, expressed
LOC_Os03g06350Os.22711.1.A1_at10/113+3157340..3158701uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os03g06360Os.27956.1.S1_at11/113+3163607..3165047Seed maturation protein, expressed
LOC_Os03g06370Os.51730.1.A1_x_at11/113+3165893..3169159expressed protein
LOC_Os03g06370Os.51730.1.A1_s_at11/113+3165893..3169159expressed protein
LOC_Os03g06370OsAffx.12750.1.S1_s_at11/113+3165893..3169159expressed protein
LOC_Os03g06390Os.10742.1.S1_at11/113+3174861..3175759expressed protein
LOC_Os03g06400Os.27069.1.A1_at11/113+3176805..3179093expressed protein
LOC_Os03g06410Os.2622.1.S1_at11/113+3180456..3187404EDR1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006413biological_processtranslational initiation
GO:0005851cellular_componenteukaryotic translation initiation factor 2B complex
GO:0003743molecular_functiontranslation initiation factor activity
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22711.1.A1_at--176--10351Chr03:3157872..3157896 (25 bp)
TTTTTGGGTCTCACTTTTCTATTTG
LOC_Os03g06350
Os.22711.1.A1_at--402--7851Chr03:3157822..3157846 (25 bp)
GGTACGAGATTCTTCGAACGATCGA
LOC_Os03g06350
Os.22711.1.A1_at--732--1551Chr03:3157675..3157699 (25 bp)
AGCTTTTCACTTTTTCTAAGGCGTG
LOC_Os03g06350
Os.22711.1.A1_at--1029--4911Chr03:3157621..3157645 (25 bp)
GCTTCCCCAAATGTGCTGCTTTGTG
LOC_Os03g06350
Os.22711.1.A1_at--1029--9051Chr03:3157605..3157629 (25 bp)
TGCTTTGTGTTTGCCTTTTTGGCCA
LOC_Os03g06350
Os.22711.1.A1_at--447--10411Chr03:3157589..3157613 (25 bp)
TTTTGGCCATCTTTGTGAGTCATCT
LOC_Os03g06350
Os.22711.1.A1_at--993--8891Chr03:3157574..3157598 (25 bp)
TGAGTCATCTTTTCACTGTTTCGCT
LOC_Os03g06350
Os.22711.1.A1_at--588--8771Chr03:3157558..3157582 (25 bp)
TGTTTCGCTCATTTCATCTTTCCTG
LOC_Os03g06350
Os.22711.1.A1_at--742--4711Chr03:3157521..3157545 (25 bp)
GCTGGTTATCTGAACTTCCTACTAA
LOC_Os03g06350
Os.22711.1.A1_at--660--10232Chr10:12763013..12763047 (24 bp)
TATTGGCTTTCCATCACAATCTCTG
LOC_Os10g25320
Os.22711.1.A1_at--658--10531Chr03:3157340..3157364 (25 bp)
TTCAGCATTCTGTTTACTTCTTACC
NONE
Target Sequence 
TTTTTGGGTCTCACTTTTCTATTTGAATTGCTGCGTACGAACAGATTTTTGGTACGAGATTCTTCGAACGATCGACTGAA
AATCTCGTTGCATGCAAAATCGCAAGCAAAATGTTTTGTACTCTAAAANNNNGGGGTCGTCTAGCTAGCTGTAAATATGN
NNGGAAATTNCGTACCAAAGTTCAGTTCGTATGCAAAAGCTTTTCACTTTTTCTAAGGCGTGAGCGTGTTGGTGAAGACA
GTATGATATNGGCTTCCCCAAATGTGCTGCTTTGTGTTTGCCTTTTTGGCCATCTTTGTGAGTCATCTTTTCACTGTTTC
GCTCATTTCATCTTTCCTGCTCTCTCTCTCTGCTGGTTATCTGAACTTCCTACTAATTATAAGGCTGAATTTGTTGTTGT
GTGGTTGATGTTGTAATAAGCTGTATTAACCATTATGATTGCTACTAGTACTAAATATTTGGGATGTGTATGTACAATCT
TATTGGCTTTCCATCACAATCTCTGCCACTAATTGTATATGTCTTCAGAGAATTCAGCATTCTGTTTACTTCTTACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22711.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis