Browse Element(s) Details


OsAffx.12750.1.S1_s_at

Description tigr:9631.m00564
TID=OsAffx.12750.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0637011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g06320OsAffx.3148.1.S1_at11/113+3141025..3142682hypothetical protein
LOC_Os03g06330Os.16915.1.S1_at11/113+3144377..3147998Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os03g06340Os.12465.1.S1_at11/113+3149214..3155533XS domain containing protein, expressed
LOC_Os03g06350Os.22711.1.A1_at10/113+3157340..3158701uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os03g06360Os.27956.1.S1_at11/113+3163607..3165047Seed maturation protein, expressed
LOC_Os03g06370Os.51730.1.A1_x_at11/113+3165893..3169159expressed protein
LOC_Os03g06370Os.51730.1.A1_s_at11/113+3165893..3169159expressed protein
LOC_Os03g06370OsAffx.12750.1.S1_s_at11/113+3165893..3169159expressed protein
LOC_Os03g06390Os.10742.1.S1_at11/113+3174861..3175759expressed protein
LOC_Os03g06400Os.27069.1.A1_at11/113+3176805..3179093expressed protein
LOC_Os03g06410Os.2622.1.S1_at11/113+3180456..3187404EDR1, putative, expressed
LOC_Os03g06420Os.7464.1.S2_at11/113+3187973..3190651expressed protein
LOC_Os03g06420Os.7464.1.S1_at11/113+3187973..3190651expressed protein
LOC_Os03g06430OsAffx.12752.1.S1_at11/113+3191902..3192186expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12750.1.S1_s_at--125--6091Chr03:3168599..3168623 (25 bp)
GAGTACCTTGCTCCAGGATTGACTT
LOC_Os03g06370
OsAffx.12750.1.S1_s_at--233--9131Chr03:3168655..3168679 (25 bp)
TGCTGTGGCCATGTCTCAAGGTGGA
LOC_Os03g06370
OsAffx.12750.1.S1_s_at--1017--9051Chr03:3168836..3168860 (25 bp)
TGCATGATCTTTTCCCATTATCCAA
LOC_Os03g06370
OsAffx.12750.1.S1_s_at--892--2751Chr03:3168885..3168909 (25 bp)
AAGACTTTCATACCTAGCCAATTCG
LOC_Os03g06370
OsAffx.12750.1.S1_s_at--717--3151Chr03:3168904..3168928 (25 bp)
AATTCGTGAGCTTCTGGTGGAGCCG
LOC_Os03g06370
OsAffx.12750.1.S1_s_at--107--8091Chr03:3168922..3168946 (25 bp)
GGAGCCGAGCTTTGGTGTCATGCAC
LOC_Os03g06370
OsAffx.12750.1.S1_s_at--755--3551Chr03:3168956..3168980 (25 bp)
CATACTCCTATATTAGTTTCCCCTT
LOC_Os03g06370
OsAffx.12750.1.S1_s_at--783--10311Chr03:3168979..3169003 (25 bp)
TTTCTATTTTCCCTTTCTGTTCTCA
LOC_Os03g06370
OsAffx.12750.1.S1_s_at--413--3871Chr03:3168995..3169019 (25 bp)
CTGTTCTCACTTTCAGTTTCAACTC
LOC_Os03g06370
OsAffx.12750.1.S1_s_at--66--171Chr03:3169028..3169052 (25 bp)
ATTTTCTTTTATTCTTCTTGGCACA
LOC_Os03g06370
OsAffx.12750.1.S1_s_at--706--10851Chr03:3169045..3169069 (25 bp)
TTGGCACATTGGCATTCATCCTCGA
LOC_Os03g06370
Target Sequence 
GAGTACCTTGCTCCAGGATTGACTTTGATTTTTTTTTCAAAAAAGGTTTCGAGCTTTGCTGTGGCCATGTCTCAAGGTGG
AACTGTGAGAAACCTTCTATGAGTTGATAAATTCTGACGTTGTGAGCAATTTCTTGAATACACTGTTCATGGTAACCACA
TTCGTGAGTTGATTATCATGAGGTTTCAGGACGATGAATCTATACATGAACACAAGATTCAGACTCACAGGATGACATGC
ATGATCTTTTCCCATTATCCAACAAATATATGGGATCAATTGACTGAAGACTTTCATACCTAGCCAATTCGTGAGCTTCT
GGTGGAGCCGAGCTTTGGTGTCATGCACCAATTAATTCATACTCCTATATTAGTTTCCCCTTTCTATTTTCCCTTTCTGT
TCTCACTTTCAGTTTCAACTCAGGTAGCAATTTTCTTTTATTCTTCTTGGCACATTGGCATTCATCCTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12750.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis