Browse Element(s) Details


Os.27956.1.S1_at

Description gb:AK106743.1
DB_XREF= gi:32991952
TID=Os.27956.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27956 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-115-B06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-115-B06, full insert sequence.
FL= gb:AK106743.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0636011/11Seed maturation protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g06310OsAffx.24992.1.S1_at11/113+3137810..3139942Subtilisin N-terminal Region family protein
LOC_Os03g06320OsAffx.3148.1.S1_at11/113+3141025..3142682hypothetical protein
LOC_Os03g06330Os.16915.1.S1_at11/113+3144377..3147998Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os03g06340Os.12465.1.S1_at11/113+3149214..3155533XS domain containing protein, expressed
LOC_Os03g06350Os.22711.1.A1_at10/113+3157340..3158701uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os03g06360Os.27956.1.S1_at11/113+3163607..3165047Seed maturation protein, expressed
LOC_Os03g06370Os.51730.1.A1_x_at11/113+3165893..3169159expressed protein
LOC_Os03g06370Os.51730.1.A1_s_at11/113+3165893..3169159expressed protein
LOC_Os03g06370OsAffx.12750.1.S1_s_at11/113+3165893..3169159expressed protein
LOC_Os03g06390Os.10742.1.S1_at11/113+3174861..3175759expressed protein
LOC_Os03g06400Os.27069.1.A1_at11/113+3176805..3179093expressed protein
LOC_Os03g06410Os.2622.1.S1_at11/113+3180456..3187404EDR1, putative, expressed
LOC_Os03g06420Os.7464.1.S2_at11/113+3187973..3190651expressed protein
LOC_Os03g06420Os.7464.1.S1_at11/113+3187973..3190651expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006873biological_processcell ion homeostasis
GO:0007275biological_processdevelopment
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009845biological_processseed germination
GO:0010226biological_processresponse to lithium ion
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27956.1.S1_at--98--4151Chr03:3163968..3163992 (25 bp)
CGCGGCCCAACGACATGAGTGGATA
LOC_Os03g06360
Os.27956.1.S1_at--673--4351Chr03:3163939..3163963 (25 bp)
CCACGCATCGATCCATGTGTATCAA
LOC_Os03g06360
Os.27956.1.S1_at--458--8771Chr03:3163922..3163946 (25 bp)
TGTATCAAACAGCTCGTGTCGCGAC
LOC_Os03g06360
Os.27956.1.S1_at--188--5811Chr03:3163900..3163924 (25 bp)
GACGCGAGCGCGATGTAAAATTAAC
LOC_Os03g06360
Os.27956.1.S1_at--224--9811Chr03:3163879..3163903 (25 bp)
TAACACGCTTCGGTGTACGTTTTAT
LOC_Os03g06360
Os.27956.1.S1_at--610--6991Chr03:3163865..3163889 (25 bp)
GTACGTTTTATATGCTTCCATCCCT
LOC_Os03g06360
Os.27956.1.S1_at--976--9531Chr03:3163840..3163864 (25 bp)
TCTAGTTTCCGTTGTTGCATTGCAT
LOC_Os03g06360
Os.27956.1.S1_at--498--2651Chr03:3163774..3163798 (25 bp)
AAGCCGTTTCTTTTCAGTTAGCCTG
LOC_Os03g06360
Os.27956.1.S1_at--751--1211Chr03:3163759..3163783 (25 bp)
AGTTAGCCTGTAGCTGTTCTCTAGC
LOC_Os03g06360
Os.27956.1.S1_at--820--9511Chr03:3163742..3163766 (25 bp)
TCTCTAGCTAGTTCTTTGGTTCGGT
LOC_Os03g06360
Os.27956.1.S1_at--689--7511Chr03:3163683..3163707 (25 bp)
GTGGATCCAGATCAATCAGGTGTTT
LOC_Os03g06360
Target Sequence 
CGCGGCCCAACGACATGAGTGGATACGATCCACGCATCGATCCATGTGTATCAAACAGCTCGTGTCGCGACGCGAGCGCG
ATGTAAAATTAACACGCTTCGGTGTACGTTTTATATGCTTCCATCCCTTCTAGTTTCCGTTGTTGCATTGCATATGGCCA
TATGGGTGGCTGAAGCTATGTTAGAATCTGTCAGAAGCCGTTTCTTTTCAGTTAGCCTGTAGCTGTTCTCTAGCTAGTTC
TTTGGTTCGGTTGGACTGAATTGGATCGTGGGAGTACGGTCAGGAGTGGATCCAGATCAATCAGGTGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27956.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis