Browse Element(s) Details


Os.12465.1.S1_at

Description gb:AK060572.1
DB_XREF= gi:32970590
TID=Os.12465.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12465 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-023-C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-023-C08, full insert sequence.
FL= gb:AK060572.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0634011/11XS domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g06270Os.28943.1.S1_x_at1/113+3121966..3125101retrotransposon protein, putative, unclassified
LOC_Os03g06280OsAffx.21756.3.S1_x_at1/113+3127691..3128221transposon protein, putative, unclassified
LOC_Os03g06290OsAffx.24991.1.S1_x_at11/113+3130625..3135429PA domain containing protein, expressed
LOC_Os03g06290Os.5657.2.S1_at11/113+3130625..3135429PA domain containing protein, expressed
LOC_Os03g06300NANA3+3135948..3137420pentatricopeptide, putative, expressed
LOC_Os03g06310OsAffx.24992.1.S1_at11/113+3137810..3139942Subtilisin N-terminal Region family protein
LOC_Os03g06320OsAffx.3148.1.S1_at11/113+3141025..3142682hypothetical protein
LOC_Os03g06330Os.16915.1.S1_at11/113+3144377..3147998Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os03g06340Os.12465.1.S1_at11/113+3149214..3155533XS domain containing protein, expressed
LOC_Os03g06350Os.22711.1.A1_at10/113+3157340..3158701uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os03g06360Os.27956.1.S1_at11/113+3163607..3165047Seed maturation protein, expressed
LOC_Os03g06370Os.51730.1.A1_x_at11/113+3165893..3169159expressed protein
LOC_Os03g06370Os.51730.1.A1_s_at11/113+3165893..3169159expressed protein
LOC_Os03g06370OsAffx.12750.1.S1_s_at11/113+3165893..3169159expressed protein
LOC_Os03g06390Os.10742.1.S1_at11/113+3174861..3175759expressed protein
LOC_Os03g06400Os.27069.1.A1_at11/113+3176805..3179093expressed protein
LOC_Os03g06410Os.2622.1.S1_at11/113+3180456..3187404EDR1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12465.1.S1_at--786--1071Chr03:3154964..3154988 (25 bp)
AGGGCACTTGGGTTTGACACTTATC
LOC_Os03g06340
Os.12465.1.S1_at--1061--1651Chr03:3155026..3155050 (25 bp)
AGCGCCTTGCTGATTTCCTTGAGAG
LOC_Os03g06340
Os.12465.1.S1_at--487--8111Chr03:3155061..3155085 (25 bp)
GGACGTATTGGTTGGTTGCATGCAC
LOC_Os03g06340
Os.12465.1.S1_at--671--651Chr03:3155080..3155104 (25 bp)
ATGCACGAGCCAACCAGTCTGTAGG
LOC_Os03g06340
Os.12465.1.S1_at--645--6451Chr03:3155109..3155133 (25 bp)
GATAATAGCCCTTTACTGGTTGAAA
LOC_Os03g06340
Os.12465.1.S1_at--634--7691Chr03:3155172..3155196 (25 bp)
GGGTACCTAGCAATTTCATCTGATA
LOC_Os03g06340
Os.12465.1.S1_at--327--2311Chr03:3155224..3155248 (25 bp)
AAAGGGCTTCCCTCAAGAGCAAGAG
LOC_Os03g06340
Os.12465.1.S1_at--43--491Chr03:3155261..3155285 (25 bp)
ATCTGATTAGCCTCTTCTCACAAAA
LOC_Os03g06340
Os.12465.1.S1_at--274--2351Chr03:3155283..3155307 (25 bp)
AAAGCACATCTCCTTGTCAGTTTAT
LOC_Os03g06340
Os.12465.1.S1_at--208--3651Chr03:3155323..3155347 (25 bp)
CTTCTGTACCTTCTCTTAAATGCTG
LOC_Os03g06340
Os.12465.1.S1_at--42--5571Chr03:3155462..3155486 (25 bp)
GAAAGCGTCCATTGCTTACTGATTG
LOC_Os03g06340
Target Sequence 
AGGGCACTTGGGTTTGACACTTATCAAGTTTGCAAACAGCCCAGCTGGCTTGAAGGAGGNTGAGCGCCTTGCTGATTTCC
TTGAGAGGCAAGATCATGGACGTATTGGTTGGTTGCATGCACGAGCCAACCAGTCTGTAGGTTCTGATAATAGCCCTTTA
CTGGTTGAAACAGATAACAGGACAGGCGAGAAAAGGAGGATACTTTATGGGTACCTAGCAATTTCATCTGATATGGATGA
ATTAGACTCTGATTCAAGGAAAAGGGCTTCCCTCAAGAGCAAGAGAGAATTTGACCCATCTGATTAGCCTCTTCTCACAA
AAGCACATCTCCTTGTCAGTTTATTTAATTCAAGCGACGCTTCTGTACCTTCTCTTAAATGCTGGTTTACAAAATATGCT
GCTGTGCACTAGAAATATTACCTTTGAAAATAGTACCTGCACTTAGGATGATTGTCATCGTTATTGCTCGAAGCTACATA
TCTCAGCAAGTGTTTTCTGAAAGCGTCCATTGCTTACTGATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12465.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis