Browse Element(s) Details


Os.5657.2.S1_at

Description gb:AK071242.1
DB_XREF= gi:32981265
TID=Os.5657.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5657 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-144-A10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023084K04, full insert sequence.
FL= gb:AK071242.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0629011/11PA domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g06240Os.12332.2.S1_x_at11/113+3105158..3109576YT521-B-like family protein, expressed
LOC_Os03g06250OsAffx.3147.1.S1_s_at11/113+3110992..3111985expressed protein
LOC_Os03g06260NANA3+3115404..3120985retrotransposon protein, putative, unclassified
LOC_Os03g06270Os.28943.1.S1_x_at1/113+3121966..3125101retrotransposon protein, putative, unclassified
LOC_Os03g06280OsAffx.21756.3.S1_x_at1/113+3127691..3128221transposon protein, putative, unclassified
LOC_Os03g06290OsAffx.24991.1.S1_x_at11/113+3130625..3135429PA domain containing protein, expressed
LOC_Os03g06290Os.5657.2.S1_at11/113+3130625..3135429PA domain containing protein, expressed
LOC_Os03g06300NANA3+3135948..3137420pentatricopeptide, putative, expressed
LOC_Os03g06310OsAffx.24992.1.S1_at11/113+3137810..3139942Subtilisin N-terminal Region family protein
LOC_Os03g06320OsAffx.3148.1.S1_at11/113+3141025..3142682hypothetical protein
LOC_Os03g06330Os.16915.1.S1_at11/113+3144377..3147998Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os03g06340Os.12465.1.S1_at11/113+3149214..3155533XS domain containing protein, expressed
LOC_Os03g06350Os.22711.1.A1_at10/113+3157340..3158701uncharacterized plant-specific domain TIGR01568 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004289molecular_functionsubtilase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5657.2.S1_at--746--9051Chr03:3130881..3130905 (25 bp)
TGCAGGATTCCTAGCTCAGCTTGTT
LOC_Os03g06290
Os.5657.2.S1_at--194--4831Chr03:3130868..3130892 (25 bp)
GCTCAGCTTGTTCAGAAACCTGGTT
LOC_Os03g06290
Os.5657.2.S1_at--800--5551Chr03:3130854..3130878 (25 bp)
GAAACCTGGTTTCATCTGGTCATCA
LOC_Os03g06290
Os.5657.2.S1_at--634--6831Chr03:3130846..3130870 (25 bp)
GTTTCATCTGGTCATCAAATCATCA
LOC_Os03g06290
Os.5657.2.S1_at--645--1271Chr03:3130807..3130831 (25 bp)
AGATCTTTTTGGGTGTGGATTTCTC
LOC_Os03g06290
Os.5657.2.S1_at--589--7511Chr03:3130793..3130817 (25 bp)
GTGGATTTCTCGAGCTTGGAGTTAA
LOC_Os03g06290
Os.5657.2.S1_at--918--171Chr03:3130767..3130791 (25 bp)
ATTTCTTCGGACAAGTAGCCACTAG
LOC_Os03g06290
Os.5657.2.S1_at--1001--1691Chr03:3130751..3130775 (25 bp)
AGCCACTAGGTGTCAGTGTGTCACT
LOC_Os03g06290
Os.5657.2.S1_at--81--5132Chr05:25381046..25381096 (25 bp)
GCAAATTTCTGGATGCTACTATTAC
NONE
Os.5657.2.S1_at--268--151Chr03:3130686..3130710 (25 bp)
ATTACTGTCATTTCTATGGCGGCTA
LOC_Os03g06290
Os.5657.2.S1_at--136--10111Chr03:3130672..3130696 (25 bp)
TATGGCGGCTAATGATGCAAGAATT
LOC_Os03g06290
Target Sequence 
TGCAGGATTCCTAGCTCAGCTTGTTCAGAAACCTGGTTTCATCTGGTCATCAAATCATCAGACTACAAAAATTGAGATCT
TTTTGGGTGTGGATTTCTCGAGCTTGGAGTTAAAATTTCTTCGGACAAGTAGCCACTAGGTGTCAGTGTGTCACTGGTCA
AGTACTACTAAATGAGCAAATTTCTGGATGCTACTATTACTGTCATTTCTATGGCGGCTAATGATGCAAGAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5657.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis