Browse Element(s) Details


Os.12332.2.S1_x_at

Description gb:AK119641.1
DB_XREF= gi:37989264
TID=Os.12332.2
CNT=92
FEA=FLmRNA
TIER=FL+Stack
STK=22
UG=Os.12332 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033128D05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-130-F09, full insert sequence.
FL= gb:AK119641.1 gb:AK111578.1 gb:AK103405.1 gb:AK062076.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0624011/11YT521-B-like family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g06180Os.54129.2.S1_x_at11/113+3077076..3081216expressed protein
LOC_Os03g06190Os.23349.1.S1_x_at11/113+3083006..30889123'-5' exonuclease family protein, expressed
LOC_Os03g06190Os.23349.2.S1_at7/113+3083006..30889123'-5' exonuclease family protein, expressed
LOC_Os03g06190OsAffx.27445.1.S1_x_at1/113+3083006..30889123'-5' exonuclease family protein, expressed
LOC_Os03g06200Os.4891.1.S1_at11/113+3089836..3091654Phosphoserine aminotransferase, chloroplast precursor, putative, expressed
LOC_Os03g06200Os.27173.1.A1_x_at1/113+3089836..3091654Phosphoserine aminotransferase, chloroplast precursor, putative, expressed
LOC_Os03g06210OsAffx.22651.3.A1_x_at10/113+3093643..3094827hypothetical protein
LOC_Os03g06210OsAffx.22651.3.A1_at10/113+3093643..3094827hypothetical protein
LOC_Os03g06210OsAffx.22651.1.S1_x_at6/113+3093643..3094827hypothetical protein
LOC_Os03g06220Os.21879.1.A1_at11/113+3095097..3099482DEAD/DEAH box helicase family protein, expressed
LOC_Os03g06230Os.52354.1.S1_at10/113+3098942..3102869expressed protein
LOC_Os03g06240Os.12332.2.S1_x_at11/113+3105158..3109576YT521-B-like family protein, expressed
LOC_Os03g06250OsAffx.3147.1.S1_s_at11/113+3110992..3111985expressed protein
LOC_Os03g06260NANA3+3115404..3120985retrotransposon protein, putative, unclassified
LOC_Os03g06270Os.28943.1.S1_x_at1/113+3121966..3125101retrotransposon protein, putative, unclassified
LOC_Os03g06280OsAffx.21756.3.S1_x_at1/113+3127691..3128221transposon protein, putative, unclassified
LOC_Os03g06290OsAffx.24991.1.S1_x_at11/113+3130625..3135429PA domain containing protein, expressed
LOC_Os03g06290Os.5657.2.S1_at11/113+3130625..3135429PA domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12332.2.S1_x_at--843--1351Chr03:3105879..3105903 (25 bp)
AGAGAACGGCACAGCTCCAGTCGTT
LOC_Os03g06240
Os.12332.2.S1_x_at--312--9231Chr03:3105864..3105888 (25 bp)
TCCAGTCGTTACCTATGCAGCGAAG
LOC_Os03g06240
Os.12332.2.S1_x_at--841--1931Chr03:3105799..3105823 (25 bp)
ACGGCACCGTCAAAGCTAGTTAACT
LOC_Os03g06240
Os.12332.2.S1_x_at--933--6751Chr03:3105781..3105805 (25 bp)
GTTAACTGGATCACATACCCCATGT
LOC_Os03g06240
Os.12332.2.S1_x_at--701--731Chr03:3105760..3105784 (25 bp)
ATGTTCCCTAGCTAGCCATGAAGAA
LOC_Os03g06240
Os.12332.2.S1_x_at--891--5471Chr03:3105720..3105744 (25 bp)
GAACTCAACAGGCATGTGGTCCCAA
LOC_Os03g06240
Os.12332.2.S1_x_at--1156--8671Chr03:3105667..3105691 (25 bp)
TGTGAAACTGGCAGCACGGGCCCAA
LOC_Os03g06240
Os.12332.2.S1_x_at--883--2791Chr03:3105644..3105668 (25 bp)
AAGATCCTGCTGCTTGGCTGCTACT
LOC_Os03g06240
Os.12332.2.S1_x_at--940--10651Chr03:3105596..3105620 (25 bp)
TTGCCTAGTTTTCTTTTGCCGTATT
LOC_Os03g06240
Os.12332.2.S1_x_at--522--2771Chr03:3105470..3105494 (25 bp)
AAGACCATGTCTGGCTTTGGTGCGT
LOC_Os03g06240
Os.12332.2.S1_x_at--67--9771Chr03:3105408..3105432 (25 bp)
TAATCCCGTTGTTGAGTGGTTCTGG
LOC_Os03g06240
Target Sequence 
AGAGAACGGCACAGCTCCAGTCGTTACCTATGCAGCGAAGGTCGCCCAAACANCAGCGACTGAGAAGCCTGCCCTTGCCA
ACGGCACCGTCAAAGCTAGTTAACTGGATCACATACCCCATGTTCCCTAGCTAGCCATGAAGAACAAGACGGTCCTGAAG
AACTCAACAGGCATGTGGTCCCAAGGAACTGATGGTCTGGAAAACTCTTATCTGTGAAACTGGCAGCACGGGCCCAAGAT
CCTGCTGCTTGGCTGCTACTGGGGAGCAGTTGGCTAGTTAGTTTTGCCTAGTTTTCTTTTGCCGTATTCCCGTTTTCGGT
TTGCTTTTTTTTTTAGCTCGCTCTAAGACNCCGTTTATAGTATCGTCGAAAATGCCAGAAAAAAACCTAGNGGCAAAGAC
AACAAGTTGCAAAGACCATGTCTGGCTTTGGTGCGTTGCGTTTCGCGCTTATTCAGTGGGGGGTGGAGTACNTATAATCC
CGTTGTTGAGTGGTTCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12332.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis