Browse Element(s) Details


Os.52354.1.S1_at

Description gb:AK066591.1
DB_XREF= gi:32976609
TID=Os.52354.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52354 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013073D03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013073D03, full insert sequence.
FL= gb:AK066591.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0623010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g06160Os.5723.1.S1_at11/113+3070969..3074757K+ channel tetramerisation domain containing protein, expressed
LOC_Os03g06170OsAffx.24989.1.S1_at11/113+3075141..3076069Hsp20/alpha crystallin family protein, expressed
LOC_Os03g06180Os.54129.2.S1_x_at11/113+3077076..3081216expressed protein
LOC_Os03g06190Os.23349.1.S1_x_at11/113+3083006..30889123'-5' exonuclease family protein, expressed
LOC_Os03g06190Os.23349.2.S1_at7/113+3083006..30889123'-5' exonuclease family protein, expressed
LOC_Os03g06190OsAffx.27445.1.S1_x_at1/113+3083006..30889123'-5' exonuclease family protein, expressed
LOC_Os03g06200Os.4891.1.S1_at11/113+3089836..3091654Phosphoserine aminotransferase, chloroplast precursor, putative, expressed
LOC_Os03g06200Os.27173.1.A1_x_at1/113+3089836..3091654Phosphoserine aminotransferase, chloroplast precursor, putative, expressed
LOC_Os03g06210OsAffx.22651.3.A1_x_at10/113+3093643..3094827hypothetical protein
LOC_Os03g06210OsAffx.22651.3.A1_at10/113+3093643..3094827hypothetical protein
LOC_Os03g06210OsAffx.22651.1.S1_x_at6/113+3093643..3094827hypothetical protein
LOC_Os03g06220Os.21879.1.A1_at11/113+3095097..3099482DEAD/DEAH box helicase family protein, expressed
LOC_Os03g06230Os.52354.1.S1_at10/113+3098942..3102869expressed protein
LOC_Os03g06240Os.12332.2.S1_x_at11/113+3105158..3109576YT521-B-like family protein, expressed
LOC_Os03g06250OsAffx.3147.1.S1_s_at11/113+3110992..3111985expressed protein
LOC_Os03g06260NANA3+3115404..3120985retrotransposon protein, putative, unclassified
LOC_Os03g06270Os.28943.1.S1_x_at1/113+3121966..3125101retrotransposon protein, putative, unclassified
LOC_Os03g06280OsAffx.21756.3.S1_x_at1/113+3127691..3128221transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52354.1.S1_at--1114--7471Chr03:3100440..3100464 (25 bp)
GTGTGGACCGTGGAGGACAACCTCT
LOC_Os03g06230
Os.52354.1.S1_at--473--8191Chr03:3100361..3100385 (25 bp)
GGAAGAAGCGCATCTACAGCACGGC
LOC_Os03g06230
Os.52354.1.S1_at--422--3811Chr03:3100333..3100357 (25 bp)
CTCCAAATTCACCACCATTGATCAG
LOC_Os03g06230
Os.52354.1.S1_at--784--1871Chr03:3099782..3099806 (25 bp)
ACGAGGACATGTACCTGTGCAGCCC
LOC_Os03g06230
Os.52354.1.S1_at--175--2931Chr03:3099732..3099756 (25 bp)
AAGGACTACTTCCTGTGCACCGGGA
LOC_Os03g06230
Os.52354.1.S1_at--419--4711Chr03:3099657..3099681 (25 bp)
GCGGCGCAGGTCATCGAGCACGACA
LOC_Os03g06230
Os.52354.1.S1_at--279--5951Chr03:3099642..3099666 (25 bp)
GAGCACGACAACCTGTAACTTCTTC
LOC_Os03g06230
Os.52354.1.S1_at--131--2311Chr03:3099586..3099610 (25 bp)
AAAGGCGACCAATTTATACACGAAT
LOC_Os03g06230
Os.52354.1.S1_at--901--7491Chr03:3099509..3099533 (25 bp)
GTGGTGCATCTCATGTATCAGCGTG
LOC_Os03g06230
Os.52354.1.S1_at--650--10171Chr03:3099494..3099518 (25 bp)
TATCAGCGTGGCCAAGTGTACAGAG
LOC_Os03g06230
Os.52354.1.S1_at--163--9851NONE
TAAATCAAGTGTACGCTTACAGCTG
NONE
Target Sequence 
GTGTGGACCGTGGAGGACAACCTCTACACCATCCTCAAGAAGAAGGTGAGCAGGGTGTACGCGGCCCCGCCGGAGGAGAG
GAAGAAGCGCATCTACAGCACGGCGCCCTCCAAATTCACCACCATTGATCAGAATAGCGGGCTGGGGTTCAGGGTGGTGA
GGATGGGGTACGAGGACATGTACCTGTGCAGCCCGGGGGAGATGTACAGGAAGTTCGGCAAGGACTACTTCCTGTGCACC
GGGACGGCGTCCATGCTGGTGCCGGTGGTCGTCAACCCCGGCGAGGAGTGGAGGGCGGCGCAGGTCATCGAGCACGACAA
CCTGTAACTTCTTCTCTATTTTTTTTTCATTATTACGACAGTGAAAAAGGCGACCAATTTATACACGAATTGTTCTTTGA
AACAAGAAACACGCTGAAAGCGATAGCATGCAGGAAGAGATAGTGGTGCATCTCATGTATCAGCGTGGCCAAGTGTACAG
AGAACAGGAAAAAGAACATGGTACATGGAACTAAACAATAAATCAAGTGTACGCTTACAGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52354.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis