Browse Element(s) Details


Os.21879.1.A1_at

Description gb:CR290189
DB_XREF= gi:44676755
DB_XREF=CR290189
CLONE=y777h08p3
TID=Os.21879.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.21879 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T46157 (A.thaliana) T46157 RNA helicase-like protein - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0622011/11DEAD/DEAH box helicase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g06160Os.5723.1.S1_at11/113+3070969..3074757K+ channel tetramerisation domain containing protein, expressed
LOC_Os03g06170OsAffx.24989.1.S1_at11/113+3075141..3076069Hsp20/alpha crystallin family protein, expressed
LOC_Os03g06180Os.54129.2.S1_x_at11/113+3077076..3081216expressed protein
LOC_Os03g06190Os.23349.1.S1_x_at11/113+3083006..30889123'-5' exonuclease family protein, expressed
LOC_Os03g06190Os.23349.2.S1_at7/113+3083006..30889123'-5' exonuclease family protein, expressed
LOC_Os03g06190OsAffx.27445.1.S1_x_at1/113+3083006..30889123'-5' exonuclease family protein, expressed
LOC_Os03g06200Os.4891.1.S1_at11/113+3089836..3091654Phosphoserine aminotransferase, chloroplast precursor, putative, expressed
LOC_Os03g06200Os.27173.1.A1_x_at1/113+3089836..3091654Phosphoserine aminotransferase, chloroplast precursor, putative, expressed
LOC_Os03g06210OsAffx.22651.3.A1_x_at10/113+3093643..3094827hypothetical protein
LOC_Os03g06210OsAffx.22651.3.A1_at10/113+3093643..3094827hypothetical protein
LOC_Os03g06210OsAffx.22651.1.S1_x_at6/113+3093643..3094827hypothetical protein
LOC_Os03g06220Os.21879.1.A1_at11/113+3095097..3099482DEAD/DEAH box helicase family protein, expressed
LOC_Os03g06230Os.52354.1.S1_at10/113+3098942..3102869expressed protein
LOC_Os03g06240Os.12332.2.S1_x_at11/113+3105158..3109576YT521-B-like family protein, expressed
LOC_Os03g06250OsAffx.3147.1.S1_s_at11/113+3110992..3111985expressed protein
LOC_Os03g06260NANA3+3115404..3120985retrotransposon protein, putative, unclassified
LOC_Os03g06270Os.28943.1.S1_x_at1/113+3121966..3125101retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006413biological_processtranslational initiation
GO:0009408biological_processresponse to heat
GO:0009409biological_processresponse to cold
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0016973biological_processpoly(A)+ mRNA export from nucleus
GO:0005635cellular_componentnuclear envelope
GO:0005737cellular_componentcytoplasm
GO:0003724molecular_functionRNA helicase activity
GO:0003743molecular_functiontranslation initiation factor activity
GO:0008026molecular_functionATP-dependent helicase activity
GO:0008186molecular_functionRNA-dependent ATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21879.1.A1_at--211--8911Chr03:3098824..3098848 (25 bp)
TGAGACCTACTTCCAGCACAATGTT
LOC_Os03g06220
Os.21879.1.A1_at--1082--10091Chr03:3099009..3099033 (25 bp)
TATGGCATCAGATGCGCTCTTCACT
LOC_Os03g06220
Os.21879.1.A1_at--904--891Chr03:3099044..3099068 (25 bp)
AGGCGCGTGATATTTACCAGCTGAA
LOC_Os03g06220
Os.21879.1.A1_at--484--5911Chr03:3099101..3099125 (25 bp)
GAGCTCATCCTTGGTTATTATGTCG
LOC_Os03g06220
Os.21879.1.A1_at--6--8131Chr03:3099230..3099254 (25 bp)
GGACTAGATCTACACTTGCATTATA
LOC_Os03g06220
Os.21879.1.A1_at--81--9071Chr03:3099246..3099270 (25 bp)
TGCATTATACTCTGTTACTTCGTGT
LOC_Os03g06220
Os.21879.1.A1_at--526--9391Chr03:3099265..3099289 (25 bp)
TCGTGTACTTAACTGGGAACCTGTT
LOC_Os03g06220
Os.21879.1.A1_at--455--8151Chr03:3099356..3099380 (25 bp)
GGAAACCTCTTTCTGGGTCAGTGTA
LOC_Os03g06220
Os.21879.1.A1_at--608--8751Chr03:3099377..3099401 (25 bp)
TGTACTTGTACACTTGCGCCATTGT
LOC_Os03g06220
Os.21879.1.A1_at--159--9171Chr03:3099391..3099415 (25 bp)
TGCGCCATTGTTTAGTTGCATGTAC
LOC_Os03g06220
Os.21879.1.A1_at--113--9171Chr03:3099433..3099452 (20 bp)
TGCGCCAGCTGTAAGTGTACACTTG
LOC_Os03g06220
Target Sequence 
TGAGACCTACTTCCAGCACAATGTTCCTGAGGNTCGTAATTGGNNAANNNGAGGAAGATTTTGAAAGANCTNTGAAGGAT
NCCGGCTTGGTTGAGTAACACCATTGGANATATGGCATCAGATGCGCTCTTCACTNGTGACGAACAGGCGCGTGATATTT
ACCAGCTGAAACAGCTTNTAAAGCNAAGCNATCGAGCTTNTTGAGCTCATCCTTGGTTATTATGTCGAGAGCTGTGAATT
CTGTTAAAGGGACTCATNCNAACNANTTTGATGCTATGAGCTTATATGAAGCNAAGNNGNNCCTTCGCTATTTNGTGGGN
ACTTGTTGNCAGGACTAGATCTACACTTGCATTATACTCTGTTACTTCGTGTACTTAACTGGGAACCTGTTTTGGTTTTT
ATGGCTTTGTNGTNGAGATGCGGTNNNCGGTGTACGTTACGCCCTTGTGNAAAAACTGGAAACCTCTTTCTGGGTCAGTG
TACTTGTACACTTGCGCCATTGTTTAGTTGCATGTACGATGTTTCTTTNTGCGCCAGCTGTAAGTGTACACTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21879.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis