Browse Element(s) Details


Os.4891.1.S1_at

Description gb:AK122101.1
DB_XREF= gi:37991747
TID=Os.4891.1
CNT=22
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.4891 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-211-A07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033125K05, full insert sequence.
FL= gb:AK122101.1 gb:AK060677.1 gb:AK120725.1 gb:AK109385.2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0620011/11Phosphoserine aminotransferase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g06139Os.8900.1.S1_a_at11/113+3055038..3065100ABC transporter family protein, putative, expressed
LOC_Os03g06160Os.5723.1.S1_at11/113+3070969..3074757K+ channel tetramerisation domain containing protein, expressed
LOC_Os03g06170OsAffx.24989.1.S1_at11/113+3075141..3076069Hsp20/alpha crystallin family protein, expressed
LOC_Os03g06180Os.54129.2.S1_x_at11/113+3077076..3081216expressed protein
LOC_Os03g06190Os.23349.1.S1_x_at11/113+3083006..30889123'-5' exonuclease family protein, expressed
LOC_Os03g06190Os.23349.2.S1_at7/113+3083006..30889123'-5' exonuclease family protein, expressed
LOC_Os03g06190OsAffx.27445.1.S1_x_at1/113+3083006..30889123'-5' exonuclease family protein, expressed
LOC_Os03g06200Os.4891.1.S1_at11/113+3089836..3091654Phosphoserine aminotransferase, chloroplast precursor, putative, expressed
LOC_Os03g06200Os.27173.1.A1_x_at1/113+3089836..3091654Phosphoserine aminotransferase, chloroplast precursor, putative, expressed
LOC_Os03g06210OsAffx.22651.3.A1_x_at10/113+3093643..3094827hypothetical protein
LOC_Os03g06210OsAffx.22651.3.A1_at10/113+3093643..3094827hypothetical protein
LOC_Os03g06210OsAffx.22651.1.S1_x_at6/113+3093643..3094827hypothetical protein
LOC_Os03g06220Os.21879.1.A1_at11/113+3095097..3099482DEAD/DEAH box helicase family protein, expressed
LOC_Os03g06230Os.52354.1.S1_at10/113+3098942..3102869expressed protein
LOC_Os03g06240Os.12332.2.S1_x_at11/113+3105158..3109576YT521-B-like family protein, expressed
LOC_Os03g06250OsAffx.3147.1.S1_s_at11/113+3110992..3111985expressed protein
LOC_Os03g06260NANA3+3115404..3120985retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006564biological_processL-serine biosynthesis
GO:0004648molecular_functionphosphoserine transaminase activity
GO:0008483molecular_functiontransaminase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4891.1.S1_at--1136--8531Chr03:3090958..3090982 (25 bp)
TGGAGAAATCCGTGCGATCGCTGAT
LOC_Os03g06200
Os.4891.1.S1_at--352--6391Chr03:3090973..3090997 (25 bp)
GATCGCTGATGAATGTGCCGTTCAC
LOC_Os03g06200
Os.4891.1.S1_at--1076--10391Chr03:3091016..3091040 (25 bp)
TTTTGAGAAGCAGTTCATCGCCGAG
LOC_Os03g06200
Os.4891.1.S1_at--137--5411Chr03:3091136..3091160 (25 bp)
GAAGCTCGTCGCGTTCATGAAGGAT
LOC_Os03g06200
Os.4891.1.S1_at--940--4391Chr03:3091167..3091191 (25 bp)
GCCAGGAACCCTTAATTTGACTCAT
LOC_Os03g06200
Os.4891.1.S1_at--762--4731Chr03:3091212..3091236 (25 bp)
GCTGTCTTCAGTAGGAATGGTCTCT
LOC_Os03g06200
Os.4891.1.S1_at--778--2971Chr03:3091227..3091251 (25 bp)
AATGGTCTCTGTTCTTCATCATAGC
LOC_Os03g06200
Os.4891.1.S1_at--779--3231Chr03:3091268..3091292 (25 bp)
CAAGAGCTGCTTTGCGCGTAAGAGA
LOC_Os03g06200
Os.4891.1.S1_at--252--6371Chr03:3091298..3091322 (25 bp)
GATCCATCTGTTGTATCGGTACCAG
LOC_Os03g06200
Os.4891.1.S1_at--333--9811Chr03:3091323..3091347 (25 bp)
TAACTATTTCGCGATGCTGCTGCTA
LOC_Os03g06200
Os.4891.1.S1_at--482--451Chr03:3091370..3091394 (25 bp)
ATCTCATTCCCATTTTGTGCCATTG
LOC_Os03g06200
Target Sequence 
TGGAGAAATCCGTGCGATCGCTGATGAATGTGCCGTTCACCCTCGCCAAGGGTGGGGATTTTGAGAAGCAGTTCATCGCC
GAGGCGGCCAAGGAGGGAATGGTGCAGCTCAAGGGGCACAGGTCGGTCGGCGGCGTGCGCGCCTCCATCTACAACGCCAT
GCCGCTCGCCGGTGTGGAGAAGCTCGTCGCGTTCATGAAGGATTTCCAAGCCAGGAACCCTTAATTTGACTCATGGTGGT
TATGGTATTTTGATGCTGTCTTCAGTAGGAATGGTCTCTGTTCTTCATCATAGCATAATTAGGCTCCTTGCAAGAGCTGC
TTTGCGCGTAAGAGATTTTCGATCCATCTGTTGTATCGGTACCAGTAACTATTTCGCGATGCTGCTGCTACTGCTTTTCA
TGTGTTCATGGGATCTCATTCCCATTTTGTGCCATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4891.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis