Browse Element(s) Details


Os.54129.2.S1_x_at

Description gb:AK106245.1
DB_XREF= gi:32991454
TID=Os.54129.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54129 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-100-D05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-100-D05, full insert sequence.
FL= gb:AK106245.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0618011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g06120Os.15302.1.S1_at11/113+3048080..3053158Protein of unknown function, DUF614 containing protein, expressed
LOC_Os03g06139Os.8900.1.S1_a_at11/113+3055038..3065100ABC transporter family protein, putative, expressed
LOC_Os03g06160Os.5723.1.S1_at11/113+3070969..3074757K+ channel tetramerisation domain containing protein, expressed
LOC_Os03g06170OsAffx.24989.1.S1_at11/113+3075141..3076069Hsp20/alpha crystallin family protein, expressed
LOC_Os03g06180Os.54129.2.S1_x_at11/113+3077076..3081216expressed protein
LOC_Os03g06190Os.23349.1.S1_x_at11/113+3083006..30889123'-5' exonuclease family protein, expressed
LOC_Os03g06190Os.23349.2.S1_at7/113+3083006..30889123'-5' exonuclease family protein, expressed
LOC_Os03g06190OsAffx.27445.1.S1_x_at1/113+3083006..30889123'-5' exonuclease family protein, expressed
LOC_Os03g06200Os.4891.1.S1_at11/113+3089836..3091654Phosphoserine aminotransferase, chloroplast precursor, putative, expressed
LOC_Os03g06200Os.27173.1.A1_x_at1/113+3089836..3091654Phosphoserine aminotransferase, chloroplast precursor, putative, expressed
LOC_Os03g06210OsAffx.22651.3.A1_x_at10/113+3093643..3094827hypothetical protein
LOC_Os03g06210OsAffx.22651.3.A1_at10/113+3093643..3094827hypothetical protein
LOC_Os03g06210OsAffx.22651.1.S1_x_at6/113+3093643..3094827hypothetical protein
LOC_Os03g06220Os.21879.1.A1_at11/113+3095097..3099482DEAD/DEAH box helicase family protein, expressed
LOC_Os03g06230Os.52354.1.S1_at10/113+3098942..3102869expressed protein
LOC_Os03g06240Os.12332.2.S1_x_at11/113+3105158..3109576YT521-B-like family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54129.2.S1_x_at--679--5131Chr03:3080565..3080589 (25 bp)
GCAAATGTCGTGATCCTCCGAGTAT
LOC_Os03g06180
Os.54129.2.S1_x_at--1076--6071Chr03:3080584..3080608 (25 bp)
GAGTATCGTCGATCGCGTTAGCGAG
LOC_Os03g06180
Os.54129.2.S1_x_at--122--1651Chr03:3080603..3080766 (25 bp)
AGCGAGGTCACCAAAGCATACAGAA
LOC_Os03g06180
Os.54129.2.S1_x_at--543--7391Chr03:3080809..3080833 (25 bp)
GTGATCCCGTTCAAATACGTCCTGA
LOC_Os03g06180
Os.54129.2.S1_x_at--1026--3931Chr03:3080847..3080871 (25 bp)
CGGCGGCTTCATGTCGAACACGAGG
LOC_Os03g06180
Os.54129.2.S1_x_at--1062--1371Chr03:3080878..3080902 (25 bp)
AGAGCCATGTCGAACCCGCAGGGAA
LOC_Os03g06180
Os.54129.2.S1_x_at--193--8631Chr03:3080920..3080944 (25 bp)
TGGTGGGAGAGCATACCTGCCGTCC
LOC_Os03g06180
Os.54129.2.S1_x_at--753--2271Chr03:3081002..3081026 (25 bp)
AAATCCTCGGTATTGTTCAGCTATA
LOC_Os03g06180
Os.54129.2.S1_x_at--903--771Chr03:3081061..3081085 (25 bp)
ATGTGCCATACTGCCATCATCTTTA
LOC_Os03g06180
Os.54129.2.S1_x_at--1074--411Chr03:3081076..3081100 (25 bp)
ATCATCTTTATCACCTGTCAGCTGG
LOC_Os03g06180
Os.54129.2.S1_x_at--130--8271Chr03:3081122..3081146 (25 bp)
GGCAGAGCACTTAACACGGAACACT
LOC_Os03g06180
Target Sequence 
GCAAATGTCGTGATCCTCCGAGTATCGTCGATCGCGTTAGCGAGGTCACCAAAGCATACAGAAACGGTGATATGGATGCT
GACAGGGTTGGCGCTGGCGCTGGCCGTGATCCCGTTCAAATACGTCCTGATCGGGGTGATGGCCGGCGGCTTCATGTCGA
ACACGAGGATCGCGAGAGCCATGTCGAACCCGCAGGGAAGCCGGCGGTGGAGGGAGTGGTGGGAGAGCATACCTGCCGTC
CCAGTTCGGGCGGTTGACGGGGGTGGTCTGTGAAGTGTTCGACGAAATGCCGGCAGAAAAATCCTCGGTATTGTTCAGCT
ATAAGCTTAAGTGTTCATGTATGTTTTTTGCTCAGAGATGTGCCATACTGCCATCATCTTTATCACCTGTCAGCTGGTGT
ATACCAGAAAAGAAAAATGGCAGAGCACTTAACACGGAACACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54129.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis