Browse Element(s) Details


Os.15302.1.S1_at

Description gb:AK103362.1
DB_XREF= gi:32988571
TID=Os.15302.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15302 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033126N07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033126N07, full insert sequence.
FL= gb:AK063160.1 gb:AK103362.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0612011/11Protein of unknown function, DUF614 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g06070Os.16556.1.S1_at11/113+3018875..3024468La domain containing protein, expressed
LOC_Os03g06080Os.7423.1.S1_at11/113+3025902..3026922heavy metal-associated domain containing protein, expressed
LOC_Os03g06090Os.23348.1.S1_at11/113+3027702..3030853high-affinity nickel-transport family protein, putative, expressed
LOC_Os03g06090Os.35209.1.S1_s_at1/113+3027702..3030853high-affinity nickel-transport family protein, putative, expressed
LOC_Os03g06100NANA3+3032426..3037938retrotransposon protein, putative, unclassified, expressed
LOC_Os03g06110NANA3+3040780..3043236retrotransposon protein, putative, unclassified
LOC_Os03g06120Os.15302.1.S1_at11/113+3048080..3053158Protein of unknown function, DUF614 containing protein, expressed
LOC_Os03g06139Os.8900.1.S1_a_at11/113+3055038..3065100ABC transporter family protein, putative, expressed
LOC_Os03g06160Os.5723.1.S1_at11/113+3070969..3074757K+ channel tetramerisation domain containing protein, expressed
LOC_Os03g06170OsAffx.24989.1.S1_at11/113+3075141..3076069Hsp20/alpha crystallin family protein, expressed
LOC_Os03g06180Os.54129.2.S1_x_at11/113+3077076..3081216expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15302.1.S1_at--1099--751Chr03:3051757..3051777 (21 bp)
ATGTCATCGTCGGAAGCATGCAATG
LOC_Os03g06120
Os.15302.1.S1_at--1143--10431Chr03:3051781..3051805 (25 bp)
TTATGGCATATTCCCTGATATTATC
LOC_Os03g06120
Os.15302.1.S1_at--880--951Chr03:3052869..3052893 (25 bp)
AGGACTAAGATTAGCCCACCCTCAT
LOC_Os03g06120
Os.15302.1.S1_at--654--1511Chr03:3052913..3052937 (25 bp)
AGCAGCGATGCAAGGCTTGAGCTTC
LOC_Os03g06120
Os.15302.1.S1_at--112--2311Chr03:3052955..3052979 (25 bp)
AAAGGCTAGAGCAACCCGGTATCGT
LOC_Os03g06120
Os.15302.1.S1_at--488--1411Chr03:3052964..3052988 (25 bp)
AGCAACCCGGTATCGTACTACAATA
LOC_Os03g06120
Os.15302.1.S1_at--795--6311Chr03:3052994..3053018 (25 bp)
GATGACACAGCTACAACATTGTTGT
LOC_Os03g06120
Os.15302.1.S1_at--365--51Chr03:3053011..3053035 (25 bp)
ATTGTTGTATTTATGCTTACCCTGC
LOC_Os03g06120
Os.15302.1.S1_at--870--9071Chr03:3053024..3053048 (25 bp)
TGCTTACCCTGCATTGTTTGTGTTG
LOC_Os03g06120
Os.15302.1.S1_at--184--6871Chr03:3053039..3053063 (25 bp)
GTTTGTGTTGGTACTCTGTTTATAG
LOC_Os03g06120
Os.15302.1.S1_at--447--2511Chr03:3053065..3053089 (25 bp)
AACATCAGTTGGTGTTGGGCACAGT
LOC_Os03g06120
Target Sequence 
ATGTCATCGTCGGAAGCATGCAATGATATTATGGCATATTCCCTGATATTATCCNGCTGTTGTTACACTTGCTGTGTGAG
GAGAAAGCTTCGTCAAAAGCTAAATATTGCGGGAGGTTGCATTGATGATTTCCTATCACATTTGATGTGTTGTTGCTGTG
CGCTTGTTCAAGAATGGCGGGAAGTTGAGATTCGTGGAGCTTATGGAGAGAGGACTAAGATTAGCCCACCCTCATTTCAG
TACATGGAACACTAAGCAGCGATGCAAGGCTTGAGCTTCTGTGAAGATAATGACCTAAAGGCTAGAGCAACCCGGTATCG
TACTACAATAGTAATGATGACACAGCTACAACATTGTTGTATTTATGCTTACCCTGCATTGTTTGTGTTGGTACTCTGTT
TATAGTAACATCAGTTGGTGTTGGGCACAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15302.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis