Browse Element(s) Details


Os.8900.1.S1_a_at

Description gb:AK121798.1
DB_XREF= gi:37991421
TID=Os.8900.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8900 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013047J21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033096H22, full insert sequence.
FL= gb:AK121798.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0613911/11ABC transporter family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g06090Os.23348.1.S1_at11/113+3027702..3030853high-affinity nickel-transport family protein, putative, expressed
LOC_Os03g06090Os.35209.1.S1_s_at1/113+3027702..3030853high-affinity nickel-transport family protein, putative, expressed
LOC_Os03g06100NANA3+3032426..3037938retrotransposon protein, putative, unclassified, expressed
LOC_Os03g06110NANA3+3040780..3043236retrotransposon protein, putative, unclassified
LOC_Os03g06120Os.15302.1.S1_at11/113+3048080..3053158Protein of unknown function, DUF614 containing protein, expressed
LOC_Os03g06139Os.8900.1.S1_a_at11/113+3055038..3065100ABC transporter family protein, putative, expressed
LOC_Os03g06160Os.5723.1.S1_at11/113+3070969..3074757K+ channel tetramerisation domain containing protein, expressed
LOC_Os03g06170OsAffx.24989.1.S1_at11/113+3075141..3076069Hsp20/alpha crystallin family protein, expressed
LOC_Os03g06180Os.54129.2.S1_x_at11/113+3077076..3081216expressed protein
LOC_Os03g06190Os.23349.1.S1_x_at11/113+3083006..30889123'-5' exonuclease family protein, expressed
LOC_Os03g06190Os.23349.2.S1_at7/113+3083006..30889123'-5' exonuclease family protein, expressed
LOC_Os03g06190OsAffx.27445.1.S1_x_at1/113+3083006..30889123'-5' exonuclease family protein, expressed
LOC_Os03g06200Os.4891.1.S1_at11/113+3089836..3091654Phosphoserine aminotransferase, chloroplast precursor, putative, expressed
LOC_Os03g06200Os.27173.1.A1_x_at1/113+3089836..3091654Phosphoserine aminotransferase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8900.1.S1_a_at--302--5311Chr03:3055513..3055537 (25 bp)
GAAGGTGCAATATCATCCTGTCCCG
LOC_Os03g06139
Os.8900.1.S1_a_at--223--111Chr03:3055485..3055509 (25 bp)
ATTCTGATCAATGCCATACCTCTTG
LOC_Os03g06139
Os.8900.1.S1_a_at--573--311Chr03:3055470..3055494 (25 bp)
ATACCTCTTGACAACGGCGTGACAG
LOC_Os03g06139
Os.8900.1.S1_a_at--791--8751Chr03:3055441..3055465 (25 bp)
TGTAGCTCTGGTCGCGATGATCATC
LOC_Os03g06139
Os.8900.1.S1_a_at--1003--6271Chr03:3055426..3055450 (25 bp)
GATGATCATCGGCTACAGGGTTCTA
LOC_Os03g06139
Os.8900.1.S1_a_at--271--1071Chr03:3055410..3055434 (25 bp)
AGGGTTCTAGCGTACATGTCTCTGA
LOC_Os03g06139
Os.8900.1.S1_a_at--1038--5231Chr03:3055358..3055382 (25 bp)
GAATCGGTCGTCGAGTGCACTAACA
LOC_Os03g06139
Os.8900.1.S1_a_at--40--7951Chr03:3055326..3055350 (25 bp)
GGATTTCTGCTAGGATGGCACCCGT
LOC_Os03g06139
Os.8900.1.S1_a_at--240--5091Chr03:3055309..3055333 (25 bp)
GCACCCGTTCTTACCAGATGATTGG
LOC_Os03g06139
Os.8900.1.S1_a_at--556--10491Chr03:3055225..3055249 (25 bp)
TTAACTGTTCTGTCTTTCTGCTACT
LOC_Os03g06139
Os.8900.1.S1_a_at--161--4851Chr03:3055206..3055230 (25 bp)
GCTACTTGTTCAGAGCGCGACATAT
LOC_Os03g06139
Target Sequence 
GAAGGTGCAATATCATCCTGTCCCGGACATTCTGATCAATGCCATACCTCTTGACAACGGCGTGACAGAAGTTGTAGCTC
TGGTCGCGATGATCATCGGCTACAGGGTTCTAGCGTACATGTCTCTGAGAAGAACGAAGACTTCAGCCAGCTAGCGAATC
GGTCGTCGAGTGCACTAACANGGAGTCTGGATTTCTGCTAGGATGGCACCCGTTCTTACCAGATGATTGGACATAGAGAA
GTTTGTAACTATATATATATAAATTGCGCCANCGNAAAGATAGATCTTTTTTAACTGTTCTGTCTTTCTGCTACTTGTTC
AGAGCGCGACATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8900.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis