Browse Element(s) Details


Os.7423.1.S1_at

Description gb:AK105367.1
DB_XREF= gi:32990576
TID=Os.7423.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7423 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-119-G06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-119-G06, full insert sequence.
FL= gb:AK105367.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0608011/11heavy metal-associated domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g06040OsAffx.12748.2.S1_at2/113+3000377..3001530Alpha-expansin 11 precursor, putative, expressed
LOC_Os03g06050OsAffx.12748.2.S1_at8/113+3005572..3006632Alpha-expansin 11 precursor, putative, expressed
LOC_Os03g06060OsAffx.12748.2.S1_at11/113+3015497..3017005Alpha-expansin 11 precursor, putative, expressed
LOC_Os03g06070Os.16556.1.S1_at11/113+3018875..3024468La domain containing protein, expressed
LOC_Os03g06080Os.7423.1.S1_at11/113+3025902..3026922heavy metal-associated domain containing protein, expressed
LOC_Os03g06090Os.23348.1.S1_at11/113+3027702..3030853high-affinity nickel-transport family protein, putative, expressed
LOC_Os03g06090Os.35209.1.S1_s_at1/113+3027702..3030853high-affinity nickel-transport family protein, putative, expressed
LOC_Os03g06100NANA3+3032426..3037938retrotransposon protein, putative, unclassified, expressed
LOC_Os03g06110NANA3+3040780..3043236retrotransposon protein, putative, unclassified
LOC_Os03g06120Os.15302.1.S1_at11/113+3048080..3053158Protein of unknown function, DUF614 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0046872molecular_functionmetal ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7423.1.S1_at--112--9171Chr03:3026167..3026191 (25 bp)
TGCGCCGTCATGTAGTATAGCCATT
LOC_Os03g06080
Os.7423.1.S1_at--549--10051Chr03:3026141..3026165 (25 bp)
TAGTTAGCTAGTCATGCACCCATGC
LOC_Os03g06080
Os.7423.1.S1_at--1067--8431Chr03:3026116..3026140 (25 bp)
GGCCATGCCATGTCTTATTGTTTTT
LOC_Os03g06080
Os.7423.1.S1_at--655--2871Chr03:3026084..3026108 (25 bp)
AAGTGTGCTGCTTTGTTTTGAGCTT
LOC_Os03g06080
Os.7423.1.S1_at--792--7151Chr03:3026056..3026080 (25 bp)
GTCTCAAGTGTGTCTGTGTGCAGTC
LOC_Os03g06080
Os.7423.1.S1_at--912--4851Chr03:3026023..3026047 (25 bp)
GCTACGCTTTGTACACTGATTATTA
LOC_Os03g06080
Os.7423.1.S1_at--122--1251Chr03:3025992..3026016 (25 bp)
AGTTGTAGGATGAGTCCCTCGTGGC
LOC_Os03g06080
Os.7423.1.S1_at--533--1131Chr03:3025980..3026004 (25 bp)
AGTCCCTCGTGGCTGTCAAAGTTTT
LOC_Os03g06080
Os.7423.1.S1_at--1026--7531Chr03:3025972..3025996 (25 bp)
GTGGCTGTCAAAGTTTTGCCTAAAA
LOC_Os03g06080
Os.7423.1.S1_at--132--5551Chr03:3025938..3025962 (25 bp)
GAAACGTGTTTGAGTACGATCGAGA
LOC_Os03g06080
Os.7423.1.S1_at--1041--6831Chr03:3025904..3025928 (25 bp)
GTTTCTTTGGCTCATAATGCTGCTA
LOC_Os03g06080
Target Sequence 
TGCGCCGTCATGTAGTATAGCCATTATAGTTAGCTAGTCATGCACCCATGCGGCCATGCCATGTCTTATTGTTTTTTTTT
TTTAAGTGTGCTGCTTTGTTTTGAGCTTGTAGTCTCAAGTGTGTCTGTGTGCAGTCTGTTCGNNGCTACGCTTTGTACAC
TGATTATTAGTTGGGAGTTGTAGGATGAGTCCCTCGTGGCTGTCAAAGTTTTGCCTAAAATTTTTGTATGAAACGTGTTT
GAGTACGATCGAGATGAGCAAATGTTTCTTTGGCTCATAATGCTGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7423.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis