Browse Element(s) Details


Os.16556.1.S1_at

Description gb:AK103466.1
DB_XREF= gi:32988675
TID=Os.16556.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16556 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033129N23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033129N23, full insert sequence.
FL= gb:AK103466.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0607011/11La domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g06030NANA3+2997486..2997740hypothetical protein
LOC_Os03g06040OsAffx.12748.2.S1_at2/113+3000377..3001530Alpha-expansin 11 precursor, putative, expressed
LOC_Os03g06050OsAffx.12748.2.S1_at8/113+3005572..3006632Alpha-expansin 11 precursor, putative, expressed
LOC_Os03g06060OsAffx.12748.2.S1_at11/113+3015497..3017005Alpha-expansin 11 precursor, putative, expressed
LOC_Os03g06070Os.16556.1.S1_at11/113+3018875..3024468La domain containing protein, expressed
LOC_Os03g06080Os.7423.1.S1_at11/113+3025902..3026922heavy metal-associated domain containing protein, expressed
LOC_Os03g06090Os.23348.1.S1_at11/113+3027702..3030853high-affinity nickel-transport family protein, putative, expressed
LOC_Os03g06090Os.35209.1.S1_s_at1/113+3027702..3030853high-affinity nickel-transport family protein, putative, expressed
LOC_Os03g06100NANA3+3032426..3037938retrotransposon protein, putative, unclassified, expressed
LOC_Os03g06110NANA3+3040780..3043236retrotransposon protein, putative, unclassified
LOC_Os03g06120Os.15302.1.S1_at11/113+3048080..3053158Protein of unknown function, DUF614 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16556.1.S1_at--963--2911Chr03:3023859..3023883 (25 bp)
AAGGAATGCCCGGTGAAGCTCTCCT
LOC_Os03g06070
Os.16556.1.S1_at--273--5411Chr03:3023873..3023897 (25 bp)
GAAGCTCTCCTTACTAGGTCAGCAA
LOC_Os03g06070
Os.16556.1.S1_at--453--6791Chr03:3023903..3023927 (25 bp)
GTTAGTCTAGGTTATCAGGCACCCC
LOC_Os03g06070
Os.16556.1.S1_at--723--8011Chr03:3023952..3023976 (25 bp)
GGAGTGGACCACTTTTTGGGCAGAA
LOC_Os03g06070
Os.16556.1.S1_at--747--10471Chr03:3023990..3024014 (25 bp)
TTACTCCGGAGCGATACCTTTTGAG
LOC_Os03g06070
Os.16556.1.S1_at--920--2571Chr03:3024036..3024060 (25 bp)
AACGGCATGCCGAGTTTTCTCTGGT
LOC_Os03g06070
Os.16556.1.S1_at--788--1191Chr03:3024048..3024072 (25 bp)
AGTTTTCTCTGGTTACGGCACGCGT
LOC_Os03g06070
Os.16556.1.S1_at--98--751Chr03:3024269..3024293 (25 bp)
ATGTATTTTGTGGTTGTGCTCTTGC
LOC_Os03g06070
Os.16556.1.S1_at--665--8691Chr03:3024283..3024307 (25 bp)
TGTGCTCTTGCTGGGACGTGAGTAC
LOC_Os03g06070
Os.16556.1.S1_at--857--3991Chr03:3024299..3024323 (25 bp)
CGTGAGTACGTGACATTACCTGTTA
LOC_Os03g06070
Os.16556.1.S1_at--172--2011Chr03:3024327..3024351 (25 bp)
ACTCGTTTGATTGTTGCTCTTTTGC
LOC_Os03g06070
Target Sequence 
AAGGAATGCCCGGTGAAGCTCTCCTTACTAGGTCAGCAACTTCAGTTAGTCTAGGTTATCAGGCACCCCCCTTGGGAGGA
TTATACAGCNAACGGGAGTGGACCACTTTTTGGGCAGAAGTCTGCNAAGAAGTTTACTCCGGAGCGATACCTTTTGAGGT
TTTACACAAGAAAGATTACAACGGCATGCCGAGTTTTCTCTGGTTACGGCACGCGTACCTCATCTACTGGGGTGAGGAGT
GAGGACTAAAATCCAGTTGATTTGGAAGAAAACAACCAAAAAAAGGAAATAAAACATACNAAAAAGAGAGATAGAAATAC
NCNAAAAAANANAAAAANATAAAAACCAAAAAAATCGAAAAACTTAAAAACNAAGAGGAAAAAACATAGTAGGTAGTATT
ATGTGCNAGGACTTATGTATTTTGTGGTTGTGCTCTTGCTGGGACGTGAGTACGTGACATTACCTGTTAAGTACTCGTTT
GATTGTTGCTCTTTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16556.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis