Browse Element(s) Details


OsAffx.12748.2.S1_at

Description tigr:9631.m00529
TID=OsAffx.12748.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Pollen allergen, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0606011/11Alpha-expansin 11 precursor, putative, expressed
LOC_Os03g060508/11Alpha-expansin 11 precursor, putative, expressed
LOC_Os03g060402/11Alpha-expansin 11 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g06030NANA3+2997486..2997740hypothetical protein
LOC_Os03g06040OsAffx.12748.2.S1_at2/113+3000377..3001530Alpha-expansin 11 precursor, putative, expressed
LOC_Os03g06050OsAffx.12748.2.S1_at8/113+3005572..3006632Alpha-expansin 11 precursor, putative, expressed
LOC_Os03g06060OsAffx.12748.2.S1_at11/113+3015497..3017005Alpha-expansin 11 precursor, putative, expressed
LOC_Os03g06070Os.16556.1.S1_at11/113+3018875..3024468La domain containing protein, expressed
LOC_Os03g06080Os.7423.1.S1_at11/113+3025902..3026922heavy metal-associated domain containing protein, expressed
LOC_Os03g06090Os.23348.1.S1_at11/113+3027702..3030853high-affinity nickel-transport family protein, putative, expressed
LOC_Os03g06090Os.35209.1.S1_s_at1/113+3027702..3030853high-affinity nickel-transport family protein, putative, expressed
LOC_Os03g06100NANA3+3032426..3037938retrotransposon protein, putative, unclassified, expressed
LOC_Os03g06110NANA3+3040780..3043236retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009826biological_processunidimensional cell growth
GO:0009828biological_processcell wall loosening (sensu Magnoliophyta)
GO:0009831biological_processcell wall modification during multidimensional cell growth (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12748.2.S1_at--785--9971Chr03:3016397..3016421 (25 bp)
TACCTCATCATCTGCGACTACGGCA
LOC_Os03g06060
OsAffx.12748.2.S1_at--905--3752Chr03:3016400..3016424 (25 bp)
CTCATCATCTGCGACTACGGCAAGG
LOC_Os03g06060
OsAffx.12748.2.S1_at--997--5172Chr03:3016419..3016443 (25 bp)
GCAAGGCGCCCGACTGGTGCAAGCT
LOC_Os03g06060
OsAffx.12748.2.S1_at--787--4192Chr03:3016427..3016451 (25 bp)
CCCGACTGGTGCAAGCTCGGCAAGG
LOC_Os03g06060
OsAffx.12748.2.S1_at--813--2692Chr03:3016439..3016463 (25 bp)
AAGCTCGGCAAGGCGATCACCGTGA
LOC_Os03g06060
OsAffx.12748.2.S1_at--196--8953Chr03:3016461..3016485 (25 bp)
TGACGGGCACCAACTACGGCGGCTG
LOC_Os03g06060
OsAffx.12748.2.S1_at--786--1913Chr03:3016463..3016487 (25 bp)
ACGGGCACCAACTACGGCGGCTGGT
LOC_Os03g06060
OsAffx.12748.2.S1_at--509--8891Chr03:3016714..3016738 (25 bp)
TGAGGTTCATCATCAACGGGTTCAA
LOC_Os03g06060
OsAffx.12748.2.S1_at--640--7891Chr03:3016717..3016741 (25 bp)
GGTTCATCATCAACGGGTTCAACTA
LOC_Os03g06060
OsAffx.12748.2.S1_at--861--5732Chr03:3016870..3016894 (25 bp)
GACTGGCCGGACAGGCGCTCAGCTT
LOC_Os03g06060
OsAffx.12748.2.S1_at--1060--9652Chr03:3016888..3016912 (25 bp)
TCAGCTTCAATGTCACCTCCACCGG
LOC_Os03g06060
Target Sequence 
TACCTCATCATCTGCGACTACGGCAAGGCGCCCGACTGGTGCAAGCTCGGCAAGGCGATCACCGTGACGGGCACCAACTA
CGGCGGCTGGTGCAACGCGACCCGCCCTTACTTCGACATGTCCCAGCCTGCCTGGGAGAACATTGGCATCTACAGCGCTG
GCATCGTCCCCATCCTCTACCAACAGGTGAAGTGCTGGAGGTATGGGGGAGTGAGGTTCATCATCAACGGGTTCAACTAC
TTCGAGCTGGTGCTGGTGACCAACATGGCCGGGAGCGGGTCGATCGTGAGCATGTCGGTGAAGGGGTCATGCACGGGGTG
GATCCAGATGACGAGGAATTGGGGCGCCAATTGGCAGTGTCTCGCTGGACTGGCCGGACAGGCGCTCAGCTTCAATGTCA
CCTCCACCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12748.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis