Browse Element(s) Details


OsAffx.3147.1.S1_s_at

Description tigr:9631.m00551
TID=OsAffx.3147.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0625011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g06190Os.23349.1.S1_x_at11/113+3083006..30889123'-5' exonuclease family protein, expressed
LOC_Os03g06190Os.23349.2.S1_at7/113+3083006..30889123'-5' exonuclease family protein, expressed
LOC_Os03g06190OsAffx.27445.1.S1_x_at1/113+3083006..30889123'-5' exonuclease family protein, expressed
LOC_Os03g06200Os.4891.1.S1_at11/113+3089836..3091654Phosphoserine aminotransferase, chloroplast precursor, putative, expressed
LOC_Os03g06200Os.27173.1.A1_x_at1/113+3089836..3091654Phosphoserine aminotransferase, chloroplast precursor, putative, expressed
LOC_Os03g06210OsAffx.22651.3.A1_x_at10/113+3093643..3094827hypothetical protein
LOC_Os03g06210OsAffx.22651.3.A1_at10/113+3093643..3094827hypothetical protein
LOC_Os03g06210OsAffx.22651.1.S1_x_at6/113+3093643..3094827hypothetical protein
LOC_Os03g06220Os.21879.1.A1_at11/113+3095097..3099482DEAD/DEAH box helicase family protein, expressed
LOC_Os03g06230Os.52354.1.S1_at10/113+3098942..3102869expressed protein
LOC_Os03g06240Os.12332.2.S1_x_at11/113+3105158..3109576YT521-B-like family protein, expressed
LOC_Os03g06250OsAffx.3147.1.S1_s_at11/113+3110992..3111985expressed protein
LOC_Os03g06260NANA3+3115404..3120985retrotransposon protein, putative, unclassified
LOC_Os03g06270Os.28943.1.S1_x_at1/113+3121966..3125101retrotransposon protein, putative, unclassified
LOC_Os03g06280OsAffx.21756.3.S1_x_at1/113+3127691..3128221transposon protein, putative, unclassified
LOC_Os03g06290OsAffx.24991.1.S1_x_at11/113+3130625..3135429PA domain containing protein, expressed
LOC_Os03g06290Os.5657.2.S1_at11/113+3130625..3135429PA domain containing protein, expressed
LOC_Os03g06300NANA3+3135948..3137420pentatricopeptide, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0004518molecular_functionnuclease activity
GO:0004523molecular_functionribonuclease H activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3147.1.S1_s_at--709--7451Chr03:3111709..3111733 (25 bp)
GTGTCGCACCTGTGCCGCGACGAGA
LOC_Os03g06250
OsAffx.3147.1.S1_s_at--229--2591Chr03:3111808..3111832 (25 bp)
AACGAGGTACTCGTGTTCCTGCAAC
LOC_Os03g06250
OsAffx.3147.1.S1_s_at--1153--1012Chr03:3111812..3111836 (25 bp)
AGGTACTCGTGTTCCTGCAACGTGA
LOC_Os03g06250
OsAffx.3147.1.S1_s_at--135--2011Chr03:3111816..3111840 (25 bp)
ACTCGTGTTCCTGCAACGTGATGCT
LOC_Os03g06250
OsAffx.3147.1.S1_s_at--908--5151Chr03:3111828..3111852 (25 bp)
GCAACGTGATGCTGATAGAGGGTAA
LOC_Os03g06250
OsAffx.3147.1.S1_s_at--1042--7031Chr03:3111855..3111879 (25 bp)
GTACAAGGACCGAACAACACAACGT
LOC_Os03g06250
OsAffx.3147.1.S1_s_at--973--5691Chr03:3111862..3111886 (25 bp)
GACCGAACAACACAACGTTAGTCGT
LOC_Os03g06250
OsAffx.3147.1.S1_s_at--1150--1871Chr03:3111876..3111900 (25 bp)
ACGTTAGTCGTTGATCGATGTGATC
LOC_Os03g06250
OsAffx.3147.1.S1_s_at--799--511Chr03:3111889..3111913 (25 bp)
ATCGATGTGATCTTTCTCTGTAAAA
LOC_Os03g06250
OsAffx.3147.1.S1_s_at--749--5911Chr03:3111927..3111951 (25 bp)
GAGAATTAAACACCATCTAACCGAA
LOC_Os03g06250
OsAffx.3147.1.S1_s_at--1065--111Chr03:3111931..3111955 (25 bp)
ATTAAACACCATCTAACCGAATCTG
LOC_Os03g06250
Target Sequence 
GTGTCGCACCTGTGCCGCGACGAGAACAAGGTGGCGCACGGGTTCGCCAAGCTCGGCCACAAGGCGCGGCGCCGCCGGGT
GTGGCACGTCGTGCCACCCAACGAGGTACTCGTGTTCCTGCAACGTGATGCTGATAGAGGGTAAAAGTACAAGGACCGAA
CAACACAACGTTAGTCGTTGATCGATGTGATCTTTCTCTGTAAAAAAGAAAGTTAACTGAGAATTAAACACCATCTAACC
GAATCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3147.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis